interpret-ir-spectrum
Über
Diese Fähigkeit interpretiert systematisch IR-Spektren, um funktionelle Gruppen durch Analyse von diagnostischen und Fingerabdruck-Bereichen zu identifizieren. Sie erkennt Wasserstoffbrückenbindungseffekte und erstellt ein bewertetes Inventar der funktionellen Gruppen. Nutzen Sie sie für das erste Screening von Verbindungen, zur Reaktionsüberwachung oder zur Bestätigung des Vorhandenseins oder Fehlens funktioneller Gruppen.
Schnellinstallation
Claude Code
Empfohlennpx skills add pjt222/agent-almanac -a claude-code/plugin add https://github.com/pjt222/agent-almanacgit clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/interpret-ir-spectrumKopieren Sie diesen Befehl und fügen Sie ihn in Claude Code ein, um diese Fähigkeit zu installieren
Dokumentation
Interpret IR Spectrum
Analyze IR absorption → id functional groups, assess H-bonding, inventory structural features.
Use When
- ID functional groups in unknown (first screen)
- Confirm presence/absence (e.g., rxn converted OH → ketone?)
- Monitor rxn progress → appear/disappear of absorptions
- Distinguish similar compounds by functional group
- Complement NMR + MS w/ vibrational info
In
- Req: IR data (abs freq cm-1 + intensities, %T or Abs)
- Req: Prep method (KBr, ATR, Nujol, thin film, soln cell)
- Opt: Mol formula / expected class
- Opt: Known frags from other spectra
- Opt: Instrument params (res, range, detector)
Do
Step 1: Spectrum Quality + Format
Verify suitability before peak analysis:
- y-axis format: %T (peaks down) / Abs (peaks up). Keep consistent.
- Wavenumber range: ≥ 4000-400 cm-1 for mid-IR. Note truncation.
- Baseline: Flat + near 100%T (or 0 Abs) in no-abs regions. Slopes/noise → reduce reliability.
- Resolution: Adjacent peaks < instrumental res → can't distinguish. Typical FTIR: 4 cm-1.
- Prep artifacts: KBr → broad OH ~3400 cm-1 (moisture). Nujol obscures CH stretch. ATR distorts low wavenumbers. Note.
→ Spectrum suitable; format, range, artifacts documented.
If err: Severe baseline probs, saturation (flat-bottom peaks → too-conc sample), prep artifacts obscuring critical regions → note limitation + flag regions unreliable.
Step 2: Diagnostic Region (4000-1500 cm-1)
High-freq region → most functional groups:
- O-H (3200-3600 cm-1): Broad abs. Sharp ~3600 → free OH; broad 3200-3400 → H-bonded OH (alcohols, acids, water).
- N-H (3300-3500 cm-1): Primary amines → 2 peaks (sym+asym); secondary → 1. Sharper than OH.
- C-H (2800-3300 cm-1):
| Frequency (cm-1) | Assignment |
|---|---|
| 3300 | sp C-H (alkyne, sharp) |
| 3000--3100 | sp2 C-H (aromatic, vinyl) |
| 2850--3000 | sp3 C-H (alkyl, multiple peaks) |
| 2700--2850 | Aldehyde C-H (two peaks from Fermi resonance) |
- Triple-bond (2000-2300 cm-1):
| Frequency (cm-1) | Assignment | Notes |
|---|---|---|
| 2100--2260 | C triple-bond C | Weak or absent if symmetric |
| 2200--2260 | C triple-bond N | Medium to strong |
| ~2350 | CO2 | Atmospheric artifact, disregard |
- Carbonyl (1650-1800 cm-1) — most diagnostic single region:
| Frequency (cm-1) | Assignment |
|---|---|
| 1800--1830, 1740--1770 | Acid anhydride (two C=O stretches) |
| 1770--1780 | Acid chloride |
| 1735--1750 | Ester |
| 1700--1725 | Carboxylic acid |
| 1705--1720 | Aldehyde |
| 1705--1720 | Ketone |
| 1680--1700 | Conjugated ketone / alpha-beta unsaturated |
| 1630--1690 | Amide (amide I band) |
- C=C + C=N (1600-1680 cm-1): Alkene C=C → 1620-1680 (weak-med). Aromatic C=C → multiple 1450-1600. C=N (imine) → 1620-1660.
→ All abs in diagnostic ID'd w/ func group + confidence (strong/tentative/absent).
If err: Carbonyl obscured (water in KBr, atm CO2) → note gap. Expected group absent → confirm w/ 2nd prep before concluding absent.
Step 3: Fingerprint (1500-400 cm-1)
Low-freq region → confirmation + structural detail:
- C-O (1000-1300 cm-1): Ethers, esters, alcohols, acids → strong C-O. Esters → characteristic strong band 1000-1100 + carbonyl.
- C-N (1000-1250 cm-1): Amines + amides; overlap C-O → tentative w/o other evidence.
- C-F, C-Cl, C-Br:
| Frequency (cm-1) | Assignment |
|---|---|
| 1000--1400 | C-F (strong) |
| 600--800 | C-Cl |
| 500--680 | C-Br |
- Aromatic subst pattern (700-900 cm-1): OOP C-H bending → substitution:
| Frequency (cm-1) | Pattern |
|---|---|
| 730--770 | Mono-substituted (+ 690--710) |
| 735--770 | Ortho-disubstituted |
| 750--810, 860--900 | Meta-disubstituted |
| 790--840 | Para-disubstituted |
- Fingerprint comparison: Region unique per compound. Ref spectrum avail → overlay + compare → identity confirm.
→ Confirmatory assignments for Step 2 groups + structural detail (subst patterns, C-O/C-N).
If err: Fingerprint inherently complex + overlapping. Ambiguous → flag tentative + rely on diagnostic + other spectra.
Step 4: H-bonding + Intermolecular Effects
Evaluate sample state + interactions:
- H-bonding broadening: Compare width+pos of OH, NH. Free OH sharp ~3600; H-bonded broad + shifted 3200-3400. Acid dimers → very broad OH 2500-3300.
- Conc + state effects: Soln spectra at diff conc → distinguish intramolecular (conc-indep) from intermolecular (conc-dep) H-bonds.
- Fermi resonance: 2 overlapping bands → doublet. Classic: aldehyde C-H pair ~2720 + 2820. Recognize → avoid mis-assign as separate groups.
- Solid-state effects: KBr + Nujol → solid packing → broadens bands + shifts 10-20 cm-1 vs soln. ATR closest to neat liquid.
→ H-bonding characterized, prep artifacts accounted, anomalous band shapes explained.
If err: H-bonding unresolved (overlap OH + NH) → note ambiguity. D2O exchange / var-temp → helps, requires add'l data.
Step 5: Compile Func Group Inventory
Assemble findings → structured report:
- Confirmed groups: Strong unambiguous abs in diagnostic (e.g., sharp C=O at 1715 = ketone/aldehyde).
- Tentative: Weaker evidence / overlap → >1 possible group.
- Absent: Characteristic strong abs clearly missing (no broad OH → no free alcohol/acid).
- Discrepancies: Abs not fitting proposed groups, or expected abs missing.
- Cross-ref: Compare IR inventory vs NMR, MS, UV-Vis if avail.
→ Complete inventory by confidence, specific freqs + intensities cited as evidence.
If err: Inventory incomplete/contradictory → ID which add'l exps (ATR vs KBr, var conc, D2O exchange) resolve ambiguity.
Check
- Quality assessed (baseline, res, artifacts, y-axis)
- Solvent, prep, atm artifacts ID'd + excluded
- All abs in diagnostic (4000-1500) assigned / flagged
- Carbonyl region → sub-type assignment where possible
- Fingerprint examined for confirmation
- H-bonding evaluated + peak shape/pos impact documented
- Inventory compiled w/ confidence
- Absent groups explicit (neg evidence informative)
- Cross-ref vs other spectra
Traps
- Ignore prep artifacts: KBr moisture (broad 3400), Nujol C-H (2850-2950), ATR distortion at low wavenumbers → mimic/obscure real. Always consider prep.
- Over-interpret fingerprint: Region < 1500 complex+overlapping. Use for confirm not primary ID. Don't assign every peak.
- Confuse atm CO2 w/ sample: Sharp doublet ~2350 = atm CO2 usually, not sample. BG subtraction removes, verify.
- Neglect intensity+width: Strong broad ≠ weak sharp at same freq. Report intensity (str/med/weak) + shape (sharp/broad) + freq.
- Single-peak assignment: Never ID func group from single abs. Carbonyls → supported by additional bands (C-O for esters, N-H for amides, C-H for aldehydes).
- Absence from weak abs: Some groups → inherently weak IR (sym C=C, triple bonds sym alkynes). Absence ≠ always absence of group.
→
interpret-nmr-spectrum— detailed connectivity + H environmentsinterpret-mass-spectrum— mol formula + fragmentationinterpret-uv-vis-spectrum— chromophores complementing IRinterpret-raman-spectrum— complementary vibrational → IR-inactive modesplan-spectroscopic-analysis— select + sequence techniques pre-acquisition
GitHub Repository
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