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simulate-stochastic-process

pjt222
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Über

Diese Fähigkeit simuliert stochastische Prozesse wie Markov-Ketten, Irrfahrten und SDEs und erzeugt Beispielpfade für Schätzung, Vorhersage und Visualisierung. Sie umfasst wichtige Funktionen wie Konvergenzdiagnostik, Varianzreduktionstechniken und MCMC-Sampling für komplexe Posterior-Verteilungen. Nutzen Sie sie, wenn analytische Lösungen nicht handhabbar sind oder wenn Sie Monte-Carlo-Schätzungen mit Konvergenzgarantien benötigen.

Schnellinstallation

Claude Code

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Primär
npx skills add pjt222/agent-almanac -a claude-code
Plugin-BefehlAlternativ
/plugin add https://github.com/pjt222/agent-almanac
Git CloneAlternativ
git clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/simulate-stochastic-process

Kopieren Sie diesen Befehl und fügen Sie ihn in Claude Code ein, um diese Fähigkeit zu installieren

Dokumentation

確率過程のシミュレーション

Simulate sample paths from stochastic processes -- including discrete Markov chains, continuous-time processes, stochastic differential equations, and MCMC samplers -- with convergence diagnostics, variance reduction techniques, and trajectory visualization.

使用タイミング

  • You need to generate sample paths from a stochastic process for estimation, prediction, or visualization
  • Analytical solutions are intractable and simulation is the only feasible approach
  • You are running Monte Carlo estimation and need convergence guarantees and uncertainty quantification
  • You want to validate analytical results (stationary distributions, hitting times) against empirical simulation
  • You need to sample from a complex posterior distribution using MCMC
  • You are prototyping a stochastic model before committing to full analytical treatment

入力

Required

InputTypeDescription
process_typestringType of process: "dtmc", "ctmc", "random_walk", "brownian_motion", "sde", "mcmc"
parametersdictProcess-specific parameters (transition matrix, drift/diffusion coefficients, target density, etc.)
n_pathsintegerNumber of independent sample paths to simulate
n_stepsintegerNumber of time steps per path (or total MCMC iterations)

Optional

InputTypeDefaultDescription
initial_statescalar/vectorprocess-specificStarting state or distribution for each path
dtfloat0.01Time step size for continuous-time discretization
seedintegerrandomRandom seed for reproducibility
burn_inintegern_steps / 10Number of initial steps to discard (MCMC)
thinninginteger1Keep every k-th sample to reduce autocorrelation
variance_reductionstring"none"Method: "none", "antithetic", "stratified", "control_variate"
target_functioncallablenoneFunction to evaluate along paths for Monte Carlo estimation

手順

ステップ1: Define Process Model and Parameters

1.1. Identify the process type and gather all required parameters:

  • DTMC: Transition matrix P and state space. Validate P is row-stochastic.
  • CTMC: Rate matrix Q. Validate rows sum to 0 and off-diagonal entries are non-negative.
  • Random walk: Step distribution (e.g., {-1, +1} with equal probability), boundaries if any.
  • Brownian motion: Drift mu, volatility sigma, dimension d.
  • SDE (Ito): Drift function a(x,t), diffusion function b(x,t).
  • MCMC: Target log-density, proposal mechanism (random walk Metropolis, Hamiltonian, Gibbs components).

1.2. Validate parameter consistency:

  • Matrix dimensions match state space size.
  • SDE coefficients satisfy growth and Lipschitz conditions (at least informally) for the chosen solver.
  • MCMC proposal is well-defined for the support of the target distribution.

1.3. Set the random seed for reproducibility.

期待結果: A fully specified stochastic model with validated parameters and a reproducible random state.

失敗時: If parameters are inconsistent (e.g., non-stochastic matrix), correct them before proceeding. If SDE coefficients are pathological, consider a different discretization scheme.

ステップ2: Select Simulation Method

2.1. Choose the appropriate algorithm based on process type:

ProcessMethodKey Property
DTMCDirect sampling from transition rowExact
CTMCGillespie algorithm (SSA)Exact, event-driven
CTMC (approx.)Tau-leapingApproximate, faster for high rates
Random walkDirect sampling of incrementsExact
Brownian motionCumulative sum of Gaussian incrementsExact for fixed dt
SDE (general)Euler-MaruyamaOrder 0.5 strong, order 1.0 weak
SDE (higher order)MilsteinOrder 1.0 strong (scalar noise)
SDE (stiff)Implicit Euler-MaruyamaStable for stiff drift
MCMC (general)Metropolis-HastingsAsymptotically exact
MCMC (gradient)Hamiltonian Monte Carlo (HMC)Better mixing for high dimensions
MCMC (conditional)Gibbs samplerExact conditionals when available

2.2. For SDE methods, choose dt small enough for numerical stability. A useful heuristic: start with dt = 0.01 and halve it until results stabilize.

2.3. For MCMC, tune the proposal scale to achieve an acceptance rate of approximately:

  • 23.4% for high-dimensional random walk Metropolis
  • 57.4% for one-dimensional targets
  • 65-90% for HMC (depends on trajectory length)

2.4. If variance reduction is requested, configure it:

  • Antithetic variates: For each path with random increments Z, also simulate with -Z.
  • Stratified sampling: Partition the probability space and sample within each stratum.
  • Control variates: Identify a correlated quantity with known expectation to reduce variance.

期待結果: A selected simulation algorithm matched to the process type with appropriate tuning parameters.

失敗時: If the chosen method is unstable (e.g., Euler-Maruyama diverging), switch to an implicit method or reduce dt.

ステップ3: Implement and Run Simulation

3.1. Allocate storage for n_paths trajectories, each of length n_steps (or dynamically for event-driven methods like Gillespie).

3.2. For each path i = 1, ..., n_paths:

DTMC / Random Walk:

  • Set x[0] = initial_state
  • For t = 1, ..., n_steps: sample x[t] from the transition distribution given x[t-1]

CTMC (Gillespie):

  • Set x[0] = initial_state, time = 0
  • While time < T_max:
    • Compute total rate lambda = -Q[x, x]
    • Sample holding time tau ~ Exp(lambda)
    • Sample next state from transition probabilities Q[x, j] / lambda for j != x
    • Update time += tau, record transition

SDE (Euler-Maruyama):

  • Set x[0] = initial_state
  • For t = 1, ..., n_steps:
    • dW = sqrt(dt) * N(0, I) (Wiener increment)
    • x[t] = x[t-1] + a(x[t-1], t*dt) * dt + b(x[t-1], t*dt) * dW

MCMC (Metropolis-Hastings):

  • Set x[0] = initial_state
  • For t = 1, ..., n_steps:
    • Propose x' ~ q(x' | x[t-1])
    • Compute acceptance ratio alpha = min(1, p(x') * q(x[t-1]|x') / (p(x[t-1]) * q(x'|x[t-1])))
    • Accept with probability alpha: x[t] = x' if accepted, else x[t] = x[t-1]
    • Record acceptance decision

3.3. If target_function is provided, evaluate it at each state along each path and store the values.

3.4. Apply thinning: keep every thinning-th sample.

3.5. Discard burn_in samples from the beginning of each path (primarily for MCMC).

期待結果: n_paths complete trajectories stored in memory, with optional function evaluations. MCMC acceptance rate is within the target range.

失敗時: If simulation produces NaN or Inf values, reduce dt for SDE methods or check parameter validity. If MCMC acceptance rate is near 0% or 100%, adjust proposal scale.

ステップ4: Apply Convergence Diagnostics

4.1. Trace plots: Plot the value of each component over time for a subset of paths. Visual inspection for stationarity (no trends, stable variance).

4.2. Gelman-Rubin diagnostic (R-hat): For MCMC with multiple chains:

  • Compute within-chain variance W and between-chain variance B.
  • R_hat = sqrt((n-1)/n + B/(n*W))
  • Convergence indicated by R_hat < 1.01 (strict) or R_hat < 1.1 (lenient).

4.3. Effective sample size (ESS):

  • Estimate autocorrelation at increasing lags.
  • ESS = n_samples / (1 + 2 * sum(autocorrelations))
  • Rule of thumb: ESS > 400 for reliable posterior summaries.

4.4. Geweke diagnostic: Compare the mean of the first 10% and last 50% of each chain. The z-score should be within [-2, 2] for convergence.

4.5. For non-MCMC processes: Verify that time-averaged statistics (mean, variance) stabilize as path length increases. Plot running averages.

4.6. Report a summary table:

DiagnosticValueThresholdStatus
R-hat (max)...< 1.01...
ESS (min)...> 400...
Geweke z (max abs)...< 2.0...
Acceptance rate...0.15-0.50...

期待結果: All convergence diagnostics pass their thresholds. Trace plots show stable, well-mixing chains.

失敗時: If R-hat > 1.1, run longer chains or improve the proposal. If ESS is very low, increase thinning or switch to a better sampler (e.g., HMC). If Geweke fails, extend burn-in.

ステップ5: Compute Summary Statistics with Confidence Intervals

5.1. For each quantity of interest (state occupancy, function expectation, hitting times):

  • Compute the point estimate as the sample mean across paths (after burn-in and thinning).
  • Compute the standard error using the effective sample size: SE = SD / sqrt(ESS).

5.2. Construct confidence intervals:

  • Normal approximation: estimate +/- z_{alpha/2} * SE
  • For skewed distributions, use percentile bootstrap or batch means.

5.3. If variance reduction was applied, compute the variance reduction factor:

  • VRF = Var(naive estimator) / Var(reduced estimator)
  • Report the effective speedup.

5.4. For Monte Carlo integration estimates:

  • Report the estimate, standard error, 95% CI, ESS, and number of function evaluations.

5.5. For distribution estimates:

  • Compute empirical quantiles (median, 2.5th, 97.5th percentiles).
  • Kernel density estimates for continuous quantities.

5.6. Tabulate all summary statistics with their uncertainties.

期待結果: Point estimates with associated standard errors and confidence intervals. Variance reduction (if applied) yields a VRF > 1.

失敗時: If confidence intervals are too wide, increase n_paths or n_steps. If variance reduction worsens estimates (VRF < 1), disable it -- the control variate or antithetic scheme may not suit the problem.

ステップ6: Visualize Trajectories and Distributions

6.1. Trajectory plots: Plot a representative subset of sample paths (5-20 paths) over time. Use transparency for overlapping paths.

6.2. Ensemble statistics: Overlay the mean trajectory and pointwise 95% confidence bands across all paths.

6.3. Marginal distributions: At selected time points, plot histograms or density estimates of the state distribution across paths.

6.4. Stationary distribution comparison: If an analytical stationary distribution is available, overlay it on the empirical histogram from the final time slice.

6.5. Autocorrelation plots: For MCMC, plot the autocorrelation function (ACF) for each component up to a reasonable lag.

6.6. Diagnostic dashboard: Combine trace plots, ACF plots, running mean plots, and marginal densities into a single multi-panel figure for comprehensive assessment.

6.7. Save all figures in both vector (PDF/SVG) and raster (PNG) formats for documentation.

期待結果: Publication-quality figures showing trajectory behavior, distributional convergence, and diagnostic summaries. Analytical solutions (where available) match empirical results.

失敗時: If visualizations reveal non-stationarity or multimodality not expected from the model, revisit Steps 1-2 for parameter or method errors. If plots are cluttered, reduce the number of displayed paths or increase figure size.

バリデーション

  • All simulated trajectories remain in the valid state space (no out-of-bounds values, no NaN/Inf)
  • For DTMC/CTMC: empirical stationary distribution converges to the analytical one (within expected Monte Carlo error)
  • For SDE: halving dt does not qualitatively change the results (convergence order check)
  • For MCMC: R-hat < 1.01, ESS > 400, Geweke z-scores within [-2, 2]
  • Confidence interval widths decrease proportionally to 1/sqrt(n_paths) (central limit theorem)
  • Variance reduction techniques yield VRF > 1 (estimates improve, not worsen)
  • Reproducibility: re-running with the same seed produces identical results

よくある落とし穴

  • Insufficient burn-in for MCMC: Starting from a poor initial state requires a long burn-in before samples represent the target distribution. Always inspect trace plots and use convergence diagnostics rather than guessing the burn-in length.
  • Euler-Maruyama instability for stiff SDEs: If the drift term has large gradients, explicit Euler-Maruyama can diverge. Switch to implicit methods or use adaptive step sizing.
  • Confusing strong and weak convergence for SDEs: Strong convergence measures pathwise error (important for individual trajectories); weak convergence measures distributional error (sufficient for expectations). Euler-Maruyama has weak order 1.0 but strong order 0.5.
  • Pseudorandom number generator quality: For very long simulations, low-quality RNGs can produce correlated samples. Use a well-tested generator (Mersenne Twister, PCG, or Xoshiro) and verify independence.
  • Ignoring autocorrelation in MCMC: Treating autocorrelated MCMC samples as independent underestimates uncertainty. Always use effective sample size, not raw sample count, for standard errors.
  • Antithetic variates for non-monotone functions: Antithetic sampling reduces variance only when the estimand is a monotone function of the underlying uniforms. For non-monotone functions, it can increase variance.
  • Memory for large simulations: Storing all time steps of many long paths can exhaust memory. Use online statistics (running mean, variance) when full trajectories are not needed for visualization.

関連スキル

  • Model Markov Chain -- provides the transition matrices and analytical solutions that simulation validates
  • Fit Hidden Markov Model -- simulation from fitted HMMs enables posterior predictive checking and synthetic data generation

GitHub Repository

pjt222/agent-almanac
Pfad: i18n/ja/skills/simulate-stochastic-process
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