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synapse-mcp
By susheel·Visit Source
Synapse MCP server for accessing biomedical data with OAuth2
April 18, 2025
22 days ago
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What is this MCP
This is a Model Context Protocol server that provides RESTful API access to Synapse biomedical data entities (datasets, projects, files) and their annotations with OAuth2 authentication support.
How to use this MCP
The server can be installed via pip or Docker, then run locally or deployed to cloud services like Fly.io. It provides CLI and API endpoints for querying Synapse data and supports both direct authentication and OAuth2 flows.
What this MCP can be used for
The Synapse MCP server enables programmatic access to biomedical research data stored in Synapse, including querying datasets, tables, and metadata in various formats like Croissant. It facilitates integration with AI tools like Claude for biomedical data analysis.
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