samtools_mcp

What is this MCP

This MCP provides a standardized interface for working with SAM/BAM/CRAM genomic alignment files, offering format conversion, sorting, indexing, and statistical analysis capabilities.

How to use this MCP

The MCP can be used via Docker (recommended) or local installation. It exposes Python methods for common operations like view, sort, index, and depth calculations on alignment files.

What this MCP can be used for

This MCP enables genomic researchers to programmatically process alignment files, including format conversion, region-specific analysis, read filtering, and generating comprehensive statistics for SAM/BAM/CRAM files.