About
The deeptools skill provides NGS analysis capabilities for converting BAM files to bigWig format and performing quality control (correlation, PCA, fingerprints). It generates heatmaps and profiles around genomic features like TSS and peaks, specifically for visualizing ChIP-seq, RNA-seq, and ATAC-seq data. Use this skill when you need to process, analyze, and create visualizations from high-throughput sequencing data.
Quick Install
Claude Code
Recommendednpx skills add mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- -a claude-code/plugin add https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-git clone https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-.git ~/.claude/skills/deeptoolsCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the deeptools skill?
deeptools is a Claude Skill by mdbabumiamssm. Skills package instructions and resources that Claude loads on demand, so Claude can perform deeptools-related tasks without extra prompting.
How do I install deeptools?
Use the install commands on this page: add deeptools to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does deeptools belong to?
deeptools is in the Design category, tagged design.
Is deeptools free to use?
Yes. deeptools is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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