About
PathML is a comprehensive computational pathology toolkit for advanced whole-slide image analysis, supporting 160+ slide formats. It enables nucleus segmentation, tissue graph construction, and ML model training, particularly for multiplexed immunofluorescence data. Use this for complex workflows, while simpler H&E tile extraction might be better suited to alternatives like histolab.
Quick Install
Claude Code
Recommendednpx skills add mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- -a claude-code/plugin add https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-git clone https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-.git ~/.claude/skills/pathmlCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the pathml skill?
pathml is a Claude Skill by mdbabumiamssm. Skills package instructions and resources that Claude loads on demand, so Claude can perform pathml-related tasks without extra prompting.
How do I install pathml?
Use the install commands on this page: add pathml to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does pathml belong to?
pathml is in the Development category, tagged ai and data.
Is pathml free to use?
Yes. pathml is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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