MCP HubMCP Hub
스킬 목록으로 돌아가기

collect-preserve-specimens

pjt222
업데이트됨 2 days ago
2 조회
17
2
17
GitHub에서 보기
메타aidesigndata

정보

이 스킬은 과학적 목적으로 곤충 표본을 수집, 보존 및 관리하기 위한 박물관 등급 프로토콜을 제공합니다. 법적 준수 사항, 다양한 수집 방법, 인도적인 처치, 건식 및 습식 보존 기술을 다룹니다. 개발자는 표준화된 표본 처리가 필요한 분류학 연구, 생태학적 증빙 자료 작성 또는 컬렉션 관리 애플리케이션을 구축할 때 이를 활용해야 합니다.

빠른 설치

Claude Code

추천
기본
npx skills add pjt222/agent-almanac -a claude-code
플러그인 명령대체
/plugin add https://github.com/pjt222/agent-almanac
Git 클론대체
git clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/collect-preserve-specimens

Claude Code에서 이 명령을 복사하여 붙여넣어 스킬을 설치하세요

문서

Collect and Preserve Specimens

Collect + preserve insect specimens → museum-grade standards for taxonomy, reference, ecology research.

Use When

  • Need physical specimens → definitive taxonomy ID
  • Building reference collection (habitat, region, taxon)
  • Preserving voucher specimens → published ecology research
  • Sending specimens to specialists for ID
  • Curating / restoring existing insect collection

In

  • Required: Legal auth (permits, landowner consent); collection gear fit for target taxa; preservation materials (pins, ethanol); labeling materials (archival paper, fine-pen or printer)
  • Optional: Spreading boards (Lepidoptera, Odonata); relaxing chamber for rehydrating dried specimens; dissecting microscope for sorting + prep; database / catalog system; unit trays, drawers, storage cabinets

Do

Step 1: Verify Legal Requirements

Before any collection → confirm legal right to collect + target taxa not protected.

FUNDAMENTAL RULE:
Never collect without proper authorization. Never collect from
protected areas without explicit permits. Never collect protected
species. The scientific value of a specimen is zero if it was
collected illegally — it cannot be published, deposited in a
museum, or used in formal research.

Legal Checklist:
+--------------------+------------------------------------------+
| Requirement        | Verify                                   |
+--------------------+------------------------------------------+
| Land access        | Written permission from landowner, or    |
|                    | site is publicly accessible for          |
|                    | collecting (many parks prohibit it)      |
+--------------------+------------------------------------------+
| Collection permit  | Required for most public lands, nature   |
|                    | reserves, national parks. Apply through  |
|                    | the managing agency. Specify taxa,       |
|                    | methods, dates, and quantities.          |
+--------------------+------------------------------------------+
| Protected species  | Check national and regional red lists,   |
|                    | CITES appendices, and local endangered   |
|                    | species legislation. Some butterflies,   |
|                    | beetles, and dragonflies are protected.  |
+--------------------+------------------------------------------+
| Export/import      | Moving specimens across international    |
|                    | borders requires phytosanitary           |
|                    | certificates and may require CITES       |
|                    | permits depending on the taxon.          |
+--------------------+------------------------------------------+
| Institutional      | If collecting for an institution, follow |
| protocols          | their collection policy and ethics       |
|                    | review requirements.                     |
+--------------------+------------------------------------------+

Minimizing Collection Impact:
- Collect only the minimum number of specimens needed
- Avoid collecting from small or isolated populations
- Do not collect gravid (egg-bearing) females if population is small
- Record the abundance at the site — if the species appears rare, photograph instead
- Prefer common and abundant species for teaching collections

All permits obtained, protected species lists checked, collector clear what may/may not collect.

If err: Can't get permits → don't collect. Photograph in situ, use citizen science platforms for ID. Accidentally collected protected species → consult wildlife authority immediately. Don't discard → report, not conceal.

Step 2: Select Collection Method

Match method to target taxa, habitat, research goals. Diff methods sample diff insect community portions.

Collection Methods:
+--------------------+------------------------------------------+
| Method             | Best For                                 |
+--------------------+------------------------------------------+
| Sweep net          | Flying and vegetation-dwelling insects    |
|                    | in grasslands, meadows, and low shrubs.  |
|                    | Technique: sweep in a figure-8 pattern   |
|                    | through vegetation; empty net into a     |
|                    | killing jar or collecting bag after      |
|                    | every 10-20 sweeps.                      |
+--------------------+------------------------------------------+
| Beating tray       | Arboreal insects on trees and shrubs.    |
|                    | Hold a white sheet or tray under a       |
|                    | branch; strike the branch sharply 3-5    |
|                    | times; collect dislodged insects with    |
|                    | an aspirator or forceps.                 |
+--------------------+------------------------------------------+
| Pitfall trap       | Ground-dwelling insects (beetles,        |
|                    | ants, crickets). Bury a cup flush with   |
|                    | the soil surface. Add a rain cover.      |
|                    | Check every 24-48 hours. Use propylene   |
|                    | glycol as preservative (non-toxic to     |
|                    | mammals; do not use ethylene glycol).    |
+--------------------+------------------------------------------+
| Light trap         | Nocturnal flying insects (moths, many    |
|                    | beetles, lacewings). Use a white sheet   |
|                    | illuminated by a mercury vapor or UV     |
|                    | light. Operate from dusk to midnight     |
|                    | or dawn. Most effective on warm, humid,  |
|                    | moonless nights.                         |
+--------------------+------------------------------------------+
| Malaise trap       | Flying insects, especially Hymenoptera   |
|                    | and Diptera. A tent-like mesh barrier    |
|                    | that intercepts insects in flight;       |
|                    | they walk upward into a collecting head  |
|                    | containing preservative. Runs            |
|                    | continuously; check weekly.              |
+--------------------+------------------------------------------+
| Aspirator (pooter) | Small, delicate insects that cannot be   |
|                    | handled with forceps. Suck the insect    |
|                    | into a vial through a tube (a mesh      |
|                    | filter prevents inhalation). Use only    |
|                    | mouth-operated aspirators with a filter. |
+--------------------+------------------------------------------+
| Pan trap           | Pollinators and small flying insects.    |
|                    | Colored bowls (yellow, white, blue)      |
|                    | filled with soapy water. Place at        |
|                    | vegetation height. The soap breaks       |
|                    | surface tension; insects fall in and     |
|                    | drown. Check every 24-48 hours.          |
+--------------------+------------------------------------------+
| Hand collection    | Large, slow, or sessile insects.         |
|                    | Pick directly with forceps or fingers.   |
|                    | Useful for bark-dwelling beetles,        |
|                    | caterpillars on host plants, aquatic     |
|                    | larvae under rocks.                      |
+--------------------+------------------------------------------+

1+ methods selected by target taxa + habitat, gear assembled + ready pre-field.

If err: Method not yielding (e.g., sweep netting in rain) → switch alt method. Light trapping needs specific weather → warm, humid, still, moonless = optimal. Poor conditions → reschedule vs. run inefficient.

Step 3: Dispatch Specimens Humanely

Kill insects fast + humane. Prolonged distress damages specimens (broken legs, lost scales) + ethically unacceptable.

Dispatch Methods:
+--------------------+------------------------------------------+
| Method             | Procedure and Notes                      |
+--------------------+------------------------------------------+
| Ethyl acetate      | Place a wad of absorbent material        |
| killing jar        | (plaster of Paris or tissue) in the      |
|                    | bottom of a wide-mouth jar. Saturate     |
|                    | with ethyl acetate. Place insects in     |
|                    | the jar; death occurs within 1-5        |
|                    | minutes for most species.                |
|                    | Caution: ethyl acetate is flammable and  |
|                    | an irritant. Use in well-ventilated     |
|                    | areas. Do not inhale.                    |
+--------------------+------------------------------------------+
| Freezing           | Place live insects in a container in a   |
|                    | freezer at -20C for 24 hours. Suitable   |
|                    | for specimens brought back alive.        |
|                    | Produces well-relaxed specimens ideal    |
|                    | for pinning.                             |
+--------------------+------------------------------------------+
| Ethanol drowning   | Immerse directly in 70-95% ethanol.      |
|                    | Used for soft-bodied insects that will   |
|                    | be wet-preserved (larvae, aphids, small  |
|                    | Diptera). Not suitable for Lepidoptera   |
|                    | (destroys scales) or specimens intended  |
|                    | for dry pinning.                         |
+--------------------+------------------------------------------+

NEVER use:
- Cyanide jars (potassium cyanide) — extremely toxic to humans;
  obsolete in modern entomology
- Crushing or squeezing — destroys morphological features
- Prolonged suffocation — slow and damages specimens from struggling

Specimens dispatched fast (minutes) w/ minimal morphology damage. Lepidoptera kept separate → prevent scale loss from contact.

If err: No ethyl acetate → freezing = best alt for most taxa. Field w/o either → individual vials or envelopes (Lepidoptera: glassine envelopes, wings folded), freeze on return. Don't leave live insects sealed w/o killing agent → they damage themselves.

Step 4: Pin Specimens (Dry Preservation)

Pin each specimen through correct location for its order. Proper pin placement essential → diagnostic access + long-term integrity.

Pin Placement by Order:
+--------------------+------------------------------------------+
| Order              | Pin Position                             |
+--------------------+------------------------------------------+
| Coleoptera         | Through the RIGHT ELYTRON (front wing    |
| (beetles)          | cover), approximately 1/3 from the       |
|                    | anterior edge, so the pin emerges        |
|                    | between the middle and hind legs.        |
+--------------------+------------------------------------------+
| Lepidoptera        | Through the CENTER OF THE THORAX         |
| (butterflies/moths)| (mesothorax), between the wing bases.    |
|                    | Wings must be spread on a spreading      |
|                    | board before the specimen dries.         |
+--------------------+------------------------------------------+
| Hymenoptera        | Through the RIGHT SIDE OF THE THORAX     |
| (bees/wasps/ants)  | (mesothorax), between the wing bases.    |
+--------------------+------------------------------------------+
| Diptera            | Through the RIGHT SIDE OF THE THORAX     |
| (flies)            | (mesothorax), between the wing bases.    |
+--------------------+------------------------------------------+
| Hemiptera          | Through the RIGHT SIDE OF THE            |
| (true bugs)        | SCUTELLUM (triangular plate between      |
|                    | wing bases), slightly to the right of    |
|                    | center.                                  |
+--------------------+------------------------------------------+
| Orthoptera         | Through the RIGHT SIDE OF THE            |
| (grasshoppers)     | PRONOTUM (just behind the head), to      |
|                    | the right of the midline.                |
+--------------------+------------------------------------------+
| Odonata            | Through the CENTER OF THE THORAX.        |
| (dragonflies)      | Wings must be spread. Alternatively,     |
|                    | store in glassine envelopes.             |
+--------------------+------------------------------------------+
| All other orders   | Through the RIGHT SIDE OF THE THORAX     |
|                    | unless order-specific guidance is        |
|                    | available.                               |
+--------------------+------------------------------------------+

Pin Selection:
- Standard entomological pins: stainless steel, sizes 0-7
- Size 3 (0.50mm) is the most commonly used general-purpose size
- Size 1-2 for small beetles and flies; size 4-5 for large beetles
- Specimens under 5mm: mount on a paper point (triangular card
  glued to a standard pin) rather than pinning directly

Pin Height:
- The specimen should sit approximately 2/3 up the pin (leaving
  room below for 2 labels and above for handling)
- Use a pinning block (stepped block with 3 heights) to ensure
  consistent specimen and label heights across the collection

Spreading Wings (Lepidoptera, Odonata):
1. Pin the specimen through the thorax
2. Place on the spreading board with the body in the groove
3. Use paper strips to hold wings in position
4. Adjust wings so the hind margin of the forewing is perpendicular
   to the body axis
5. Leave on the board for 3-7 days until completely dry
6. Remove paper strips carefully

Each specimen pinned correct position for order, correct pin height, wings spread where req'd (Lepidoptera, Odonata). Specimens fully dry before handling.

If err: Specimen too dry + brittle to pin (legs snap, wings crack) → needs relaxing first. Place in relaxing chamber 24-48 hrs until limbs pliable. Pin in wrong spot → better carefully re-pin while specimen fresh than leave incorrect.

Step 5: Preserve in Ethanol (Wet Preservation)

Soft-bodied specimens that shrivel / distort dry → preserve in liquid.

Wet Preservation Protocol:
+--------------------+------------------------------------------+
| Category           | Procedure                                |
+--------------------+------------------------------------------+
| Preservative       | 70-80% ethanol for morphological study.  |
|                    | 95-100% ethanol for DNA-grade            |
|                    | preservation (change ethanol after 24    |
|                    | hours to remove dilution from body       |
|                    | fluids).                                 |
+--------------------+------------------------------------------+
| Suitable specimens | Larvae (caterpillars, grubs, maggots),   |
|                    | soft-bodied adults (aphids, termites,    |
|                    | some small Diptera), aquatic insects,    |
|                    | immature stages (nymphs, pupae)          |
+--------------------+------------------------------------------+
| Containers         | Glass vials with screw caps or           |
|                    | polyethylene snap-cap vials. Avoid       |
|                    | rubber stoppers (ethanol dissolves       |
|                    | them). Label goes INSIDE the vial.       |
+--------------------+------------------------------------------+
| Fluid ratio        | At least 3 parts preservative to 1 part  |
|                    | specimen volume. Too little fluid        |
|                    | results in poor preservation.            |
+--------------------+------------------------------------------+
| Long-term storage  | Check fluid levels every 6-12 months.    |
|                    | Ethanol evaporates even through sealed   |
|                    | caps. Top up as needed. Store in a cool, |
|                    | dark location.                           |
+--------------------+------------------------------------------+

Do NOT use:
- Formaldehyde/formalin for routine insect preservation (destroys DNA,
  poses health risks, requires special disposal). Some historical
  collections used it; modern practice strongly discourages it.
- Isopropanol as a substitute — it causes excessive hardening and
  color loss compared to ethanol.

Soft-bodied specimens preserved 70-80% ethanol (or 95%+ for DNA) in labeled vials w/ sufficient fluid volume.

If err: No ethanol in field → temporarily high-proof clear spirits (vodka, Everclear) as emergency. Transfer to lab-grade ethanol ASAP. Stored too long in weak preservative → maybe still ID'able but unsuitable for molecular work.

Step 6: Label Every Specimen

Every specimen must carry labels → min data for scientific use. Unlabeled specimen = zero scientific value.

Labeling Standards:

LABEL 1 (Locality label — placed closest to the specimen on the pin):
  Line 1: Country, State/Province
  Line 2: Specific locality (e.g., "3 km NE of Oakville, Elm Creek trail")
  Line 3: Latitude/Longitude (decimal degrees preferred)
  Line 4: Elevation (meters above sea level)
  Line 5: Date (e.g., 15.vi.2026 or 15-Jun-2026)
  Line 6: Collector name (e.g., "leg. P. Thoss")

LABEL 2 (Habitat/method label — below the locality label):
  Line 1: Habitat (e.g., "deciduous forest, oak canopy")
  Line 2: Collection method (e.g., "sweep net" or "light trap")
  Line 3: Additional ecological data if relevant

LABEL 3 (Determination label — lowest on the pin, added when identified):
  Line 1: Order Family
  Line 2: Genus species Author, Year
  Line 3: "det. [identifier name], [year]"

Label Format Rules:
- Use archival-quality paper (acid-free, resistant to fumigant chemicals)
- Print labels using a laser printer (inkjet fades; handwriting smudges)
- Labels should be small (approximately 13mm x 8mm) — do not obscure
  the specimen
- For wet specimens, the label goes INSIDE the vial on acid-free paper
  written in pencil or printed with a laser printer (ink dissolves in
  ethanol; pencil graphite does not)
- Pin labels below the specimen using the pinning block for consistent
  heights

Every specimen carries min locality label: country, locality, coords, date, collector. Wet specimens same data on internal label in pencil or laser-printed.

If err: No GPS coords in field → estimate from map via locality desc. Date uncertain → best estimate + question mark. Specimen w/ approx data > specimen w/ no label. NEVER move label from one specimen to another.

Step 7: Store + Protect Collection

Proper storage protects from physical damage, pests, env degradation.

Dry Collection Storage:
+--------------------+------------------------------------------+
| Component          | Standard                                 |
+--------------------+------------------------------------------+
| Unit trays         | Cardboard or plastic trays with foam     |
|                    | bottoms (plastazote preferred — pinnable |
|                    | and chemically inert). Specimens pinned  |
|                    | into the foam in organized rows.         |
+--------------------+------------------------------------------+
| Drawers            | Tight-fitting drawers that exclude dust  |
|                    | and pests. Glass-topped drawers allow    |
|                    | viewing without opening.                 |
+--------------------+------------------------------------------+
| Cabinets           | Steel cabinets with tight seals.         |
|                    | Compressed-air gaskets are ideal.        |
+--------------------+------------------------------------------+
| Pest management    | Place pest strips (dichlorvos/DDVP) or   |
|                    | naphthalene/paradichlorobenzene crystals  |
|                    | in each drawer. Check and replace every  |
|                    | 6 months. Museum beetle (Anthrenus) and  |
|                    | book lice (Psocoptera) are the primary   |
|                    | pests — a single infestation can destroy |
|                    | an entire drawer.                        |
+--------------------+------------------------------------------+
| Climate control    | Target: 40-50% relative humidity,        |
|                    | 18-22C temperature. Fluctuations cause   |
|                    | expansion/contraction damage. Avoid      |
|                    | direct sunlight (fades color).           |
+--------------------+------------------------------------------+

Wet Collection Storage:
- Store vials upright in racks or jars
- Check fluid levels every 6-12 months; top up with fresh ethanol
- Store in a cool, dark, well-ventilated area (ethanol fumes)
- Keep away from ignition sources (ethanol is flammable)
- For long-term storage, use screw-cap glass vials; snap-cap
  plastic vials allow more evaporation

Dry specimens sealed drawers + pest deterrents. Wet specimens upright + adequate ethanol. Storage area stable temp + humidity.

If err: No museum storage → pinned specimens in airtight plastic containers (tackle boxes, Tupperware) w/ foam inserts + pest deterrent. Adequate for personal + short-term. Long-term sci-valuable → deposit recognized museum or university.

Step 8: Curate + Enter Database

Maintain collection as living sci resource → systematic curation + data mgmt.

Curation Tasks:
+--------------------+------------------------------------------+
| Task               | Frequency                                |
+--------------------+------------------------------------------+
| Pest inspection    | Every 3-6 months. Look for frass (fine   |
|                    | powder under specimens), cast skins,     |
|                    | or live pests in drawers.                |
+--------------------+------------------------------------------+
| Fumigant refresh   | Every 6 months. Replace pest strips or   |
|                    | crystals. Ensure drawers seal tightly.   |
+--------------------+------------------------------------------+
| Ethanol top-up     | Every 6-12 months for wet collections.   |
+--------------------+------------------------------------------+
| Repair             | Re-pin loose specimens. Re-glue detached |
|                    | appendages (use water-soluble PVA glue). |
|                    | Replace damaged labels.                  |
+--------------------+------------------------------------------+
| Identification     | Send unidentified specimens to           |
| updates            | specialists. Update determination labels |
|                    | as IDs are returned — never remove old   |
|                    | determination labels; add new ones below.|
+--------------------+------------------------------------------+

Database Entry (minimum fields):
- Catalog number (unique identifier for each specimen)
- Taxon (order, family, genus, species)
- Locality (country, state, specific location, coordinates)
- Date of collection
- Collector
- Collection method
- Determiner and determination date
- Storage location (cabinet, drawer, row, position)
- Preservation type (pinned, ethanol, slide-mounted, point-mounted)

Database Standards:
- Use Darwin Core format for interoperability with global databases
  (GBIF, iDigBio)
- Record coordinates in decimal degrees (WGS84 datum)
- Use ISO 8601 date format (YYYY-MM-DD) in databases
- Assign a unique catalog number to every specimen, even if unidentified

All specimens cataloged in DB w/ unique IDs, taxonomy, locality, date, collector, storage location. Regular inspection + maintenance schedule.

If err: Full DB not feasible → min handwritten catalog or spreadsheet w/ catalog numbers matching specimens. Catalog number links specimen to data → w/o it, specimen + data disconnect if labels lost. Simple numbered list > no catalog.

Check

  • Legal req's verified + permits obtained pre-collect
  • Collection methods fit target taxa + habitat
  • Specimens dispatched humanely + prompt
  • Dry specimens pinned correct position for order
  • Lepidoptera + Odonata had wings properly spread pre-dry
  • Soft-bodied preserved 70-80% ethanol
  • Every specimen carries locality label: date, location, coords, collector
  • Wet specimen labels pencil or laser-printed, inside vial
  • Storage: pest deterrents + stable env
  • Specimens cataloged in DB or notebook w/ unique IDs

Traps

  • Collect w/o permits: Illegal → can't publish, deposit, transfer borders. Always auth first.
  • Over-collect: Depletes pops w/o benefit. Min for ID (5-10 per morphospecies per site).
  • Mix diff sites: Locality data uncertain for batch. Each event → separate container + temp label.
  • Wrong pin position: Pinning beetle through thorax center vs. right elytron obscures ventral features. Check order-specific position.
  • Ethanol too low for DNA: Molecular needs 95%+ ethanol + change after 24 hrs. 70% preserves morphology but degrades DNA.
  • No internal wet label: Outside label detaches. Inside = permanent. Pencil or laser-print inside.
  • Neglect pest mgmt: Dermestid beetles destroy drawer in weeks. Monitoring + fumigant not optional > few months.

  • identify-insect — morphology ID via dichotomous keys, wing venation, mouthparts, antennae
  • document-insect-sighting — photographic + contextual doc supplementing/replacing collecting
  • observe-insect-behavior — behavioral observation for live insects before/instead of collecting
  • survey-insect-population — systematic pop surveys req collection for ID + voucher

GitHub 저장소

pjt222/agent-almanac
경로: i18n/caveman-ultra/skills/collect-preserve-specimens
0
agentsagentskillsai-assisted-developmentclaude-codeskillsteams

연관 스킬

content-collections

메타

이 스킬은 콘텐츠 콜렉션(Content Collections)을 위한 프로덕션 검증된 설정을 제공합니다. 콘텐츠 콜렉션은 Markdown/MDX 파일을 Zod 검증이 포함된 타입 안전한 데이터 콜렉션으로 변환해주는 TypeScript 최우선 도구입니다. 블로그, 문서 사이트 또는 콘텐츠 중심의 Vite + React 애플리케이션을 구축할 때 타입 안전성과 자동 콘텐츠 검증을 보장하기 위해 사용하세요. Vite 플러그인 구성과 MDX 컴파일부터 배포 최적화 및 스키마 검증에 이르기까지 모든 것을 다룹니다.

스킬 보기

polymarket

메타

이 스킬은 개발자들이 Polymarket 예측 시장 플랫폼을 활용한 애플리케이션을 구축할 수 있도록 지원하며, 거래 및 시장 데이터를 위한 API 통합 기능을 포함합니다. 또한 WebSocket을 통한 실시간 데이터 스트리밍을 제공하여 실시간 거래와 시장 활동을 모니터링할 수 있습니다. 이를 통해 거래 전략을 구현하거나 실시간 시장 업데이트를 처리하는 도구를 생성하는 데 활용할 수 있습니다.

스킬 보기

creating-opencode-plugins

메타

이 스킬은 개발자들이 명령어, 파일, LSP 작업 등 25개 이상의 이벤트 유형에 연결되는 OpenCode 플러그인을 만들 수 있도록 돕습니다. JavaScript/TypeScript 모듈을 위한 플러그인 구조, 이벤트 API 명세, 구현 패턴을 제공합니다. OpenCode AI 어시스턴트의 라이프사이클을 사용자 정의 이벤트 기반 로직으로 가로채거나, 모니터링하거나, 확장해야 할 때 사용하세요.

스킬 보기

sglang

메타

SGLang은 RadixAttention 프리픽스 캐싱을 활용하여 JSON, 정규식, 에이전트 워크플로우를 위한 고속 구조화 생성에 특화된 고성능 LLM 서빙 프레임워크입니다. 특히 반복되는 프리픽스가 있는 작업에서 상당히 빠른 추론 속도를 제공하여 복잡한 구조화 출력 및 다중 턴 대화에 이상적입니다. 제약 디코딩이 필요하거나 광범위한 프리픽스 공유가 있는 애플리케이션을 구축할 때는 vLLM과 같은 대안보다 SGLang을 선택하십시오.

스킬 보기