nf-core_mcp
用于管理nf-core流程的MCP服务器. nf-core_mcp is a Model Context Protocol (MCP) server maintained by wjlim. It connects to MCP-compatible clients such as Claude Desktop, Cursor, Cline, and other agents that speak the protocol. It exposes 5 tools, including list-pipelines, get-pipeline-modules, search-pipelines, pipeline-config and pipeline-workflow, that an agent can call directly. It is categorized under Tool/Server and DevOps/Workflow.
什么是MCP
该MCP服务器旨在管理和导航nf-core流程仓库，提供列出、搜索和访问流程配置及工作流的工具。
如何使用MCP
通过npm或Docker安装，将nf-core仓库克隆至工作区，使用list-pipelines、get-pipeline-modules和search-pipelines等命令与流程交互。
MCP的用途
可用于简化nf-core流程管理，便捷访问配置、工作流和模块，并支持跨流程文件的搜索功能。
AIMCP authority
DR and traffic signal for the AIMCP public domain.
Frequently asked questions
What is the nf-core_mcp MCP server?
nf-core_mcp is a Model Context Protocol server from wjlim. It lets MCP-compatible AI clients call its tools over a standard interface, so agents like Claude, Cursor, and Cline can use it without custom integration.
How do I connect nf-core_mcp to my AI client?
Add nf-core_mcp to your client's MCP configuration using the stdio or SSE connection shown in the usage examples on this page, then restart the client to load the server.
What tools does nf-core_mcp provide?
nf-core_mcp provides 5 tools: list-pipelines, get-pipeline-modules, search-pipelines, pipeline-config and pipeline-workflow.
Is nf-core_mcp free to use?
nf-core_mcp is listed on AIMCP for free. Any API keys or accounts required by the underlying service are set by its provider.
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