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interpret-ir-spectrum

pjt222
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À propos

Cette compétence analyse systématiquement les spectres infrarouges pour identifier les groupes fonctionnels dans un échantillon. Elle interprète à la fois les régions diagnostiques (4000-1500 cm⁻¹) et les régions d'empreinte digitale (1500-400 cm⁻¹), en tenant compte des effets de liaison hydrogène. Les développeurs peuvent l'utiliser pour un criblage initial de composés, car elle compile un inventaire des groupes fonctionnels avec des niveaux de confiance.

Installation rapide

Claude Code

Recommandé
Principal
npx skills add pjt222/agent-almanac -a claude-code
Commande PluginAlternatif
/plugin add https://github.com/pjt222/agent-almanac
Git CloneAlternatif
git clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/interpret-ir-spectrum

Copiez et collez cette commande dans Claude Code pour installer cette compétence

Documentation

IRスペクトルの解釈

Analyze infrared absorption spectra to identify functional groups, assess hydrogen bonding, and compile a comprehensive inventory of structural features present in the sample.

使用タイミング

  • Identifying functional groups in an unknown compound as a first screening step
  • Confirming the presence or absence of specific functional groups (e.g., verifying a reaction converted an alcohol to a ketone)
  • Monitoring reaction progress by tracking the appearance or disappearance of characteristic absorptions
  • Distinguishing between similar compounds that differ in functional group content
  • Complementing NMR and mass spectrometry data with vibrational information

入力

  • 必須: IR spectrum data (absorption frequencies in cm-1 with intensities, either as %Transmittance or Absorbance plot)
  • 必須: Sample preparation method (KBr pellet, ATR, Nujol mull, thin film, solution cell)
  • 任意: Molecular formula or expected compound class
  • 任意: Known structural fragments from other spectroscopic data
  • 任意: Instrument parameters (resolution, scan range, detector type)

手順

ステップ1: Establish Spectrum Quality and Format

Verify that the spectrum is suitable for interpretation before analyzing peaks:

  1. Check y-axis format: Determine whether the spectrum is plotted in %Transmittance (%T, peaks point down) or Absorbance (A, peaks point up). All subsequent analysis assumes consistent convention.
  2. Verify wavenumber range: Confirm the spectrum covers at least 4000--400 cm-1 for a standard mid-IR analysis. Note any truncation.
  3. Assess baseline: A good baseline should be relatively flat and near 100%T (or 0 Absorbance) in regions with no absorption. Sloping or noisy baselines reduce reliability.
  4. Check resolution: Adjacent peaks separated by less than the instrumental resolution cannot be distinguished. Typical FTIR resolution is 4 cm-1.
  5. Identify preparation artifacts: KBr pellets may show a broad O-H band from absorbed moisture (~3400 cm-1). Nujol mulls obscure C-H stretches. ATR spectra show intensity distortion at low wavenumbers. Note any artifacts that limit interpretation.

期待結果: Spectrum confirmed as suitable for analysis, with format, range, and artifacts documented.

失敗時: If the spectrum has severe baseline problems, saturation (flat-bottomed peaks from too-concentrated samples), or preparation artifacts obscuring critical regions, note the limitation and flag affected spectral regions as unreliable.

ステップ2: Scan the Diagnostic Region (4000--1500 cm-1)

Systematically analyze the high-frequency region where most functional groups produce characteristic absorptions:

  1. O-H stretches (3200--3600 cm-1): Look for broad absorptions. A sharp peak near 3600 cm-1 indicates free O-H; a broad band centered at 3200--3400 cm-1 indicates hydrogen-bonded O-H (alcohols, carboxylic acids, water).
  2. N-H stretches (3300--3500 cm-1): Primary amines show two peaks (symmetric and asymmetric stretch); secondary amines show one peak. These are typically sharper than O-H bands.
  3. C-H stretches (2800--3300 cm-1):
Frequency (cm-1)Assignment
3300sp C-H (alkyne, sharp)
3000--3100sp2 C-H (aromatic, vinyl)
2850--3000sp3 C-H (alkyl, multiple peaks)
2700--2850Aldehyde C-H (two peaks from Fermi resonance)
  1. Triple-bond region (2000--2300 cm-1):
Frequency (cm-1)AssignmentNotes
2100--2260C triple-bond CWeak or absent if symmetric
2200--2260C triple-bond NMedium to strong
~2350CO2Atmospheric artifact, disregard
  1. Carbonyl region (1650--1800 cm-1) -- the most diagnostic single region in IR:
Frequency (cm-1)Assignment
1800--1830, 1740--1770Acid anhydride (two C=O stretches)
1770--1780Acid chloride
1735--1750Ester
1700--1725Carboxylic acid
1705--1720Aldehyde
1705--1720Ketone
1680--1700Conjugated ketone / alpha-beta unsaturated
1630--1690Amide (amide I band)
  1. C=C and C=N stretches (1600--1680 cm-1): Alkene C=C appears at 1620--1680 cm-1 (weak to medium). Aromatic C=C shows multiple peaks near 1450--1600 cm-1. C=N (imine) appears at 1620--1660 cm-1.

期待結果: All absorptions in the diagnostic region identified, with functional group assignments and confidence levels (strong, tentative, absent).

失敗時: If the carbonyl region is obscured (e.g., water absorption in KBr, atmospheric CO2), note the gap. If an expected functional group absorption is absent, confirm with a second preparation method before concluding it is truly absent.

ステップ3: Analyze the Fingerprint Region (1500--400 cm-1)

Examine the lower-frequency region for confirmatory and structural detail:

  1. C-O stretches (1000--1300 cm-1): Ethers, esters, alcohols, and carboxylic acids produce strong C-O stretching absorptions. Esters show a characteristic strong band near 1000--1100 cm-1 in addition to the carbonyl.
  2. C-N stretches (1000--1250 cm-1): Amines and amides; overlap with C-O makes assignment tentative without other evidence.
  3. C-F, C-Cl, C-Br stretches:
Frequency (cm-1)Assignment
1000--1400C-F (strong)
600--800C-Cl
500--680C-Br
  1. Aromatic substitution pattern (700--900 cm-1): Out-of-plane C-H bending reveals substitution:
Frequency (cm-1)Pattern
730--770Mono-substituted (+ 690--710)
735--770Ortho-disubstituted
750--810, 860--900Meta-disubstituted
790--840Para-disubstituted
  1. Overall fingerprint comparison: The fingerprint region is unique to each compound. If a reference spectrum is available, overlay and compare this region for identity confirmation.

期待結果: Confirmatory assignments for functional groups identified in Step 2, plus additional structural detail (substitution patterns, C-O/C-N assignments).

失敗時: The fingerprint region is inherently complex and overlapping. If assignments are ambiguous, flag them as tentative and rely on the diagnostic region and other spectroscopic data for final conclusions.

ステップ4: Assess Hydrogen Bonding and Intermolecular Effects

Evaluate how sample state and intermolecular interactions affect the spectrum:

  1. Hydrogen bonding broadening: Compare the width and position of O-H and N-H bands. Free O-H is sharp and near 3600 cm-1; hydrogen-bonded O-H is broad and shifted to 3200--3400 cm-1. Carboxylic acid dimers show a very broad O-H from 2500--3300 cm-1.
  2. Concentration and state effects: Solution spectra at different concentrations can distinguish intramolecular (concentration-independent) from intermolecular (concentration-dependent) hydrogen bonds.
  3. Fermi resonance: Two overlapping bands can interact to split into a doublet. The classic example is the aldehyde C-H pair near 2720 and 2820 cm-1. Recognize Fermi resonance to avoid misassigning extra peaks as separate functional groups.
  4. Solid-state effects: KBr pellets and Nujol mulls reflect solid-state packing, which broadens bands and can shift frequencies by 10--20 cm-1 relative to solution spectra. ATR spectra are closest to the neat liquid state.

期待結果: Hydrogen bonding state characterized, preparation-method artifacts accounted for, and any anomalous band shapes explained.

失敗時: If hydrogen bonding effects cannot be resolved (e.g., overlapping O-H and N-H bands), note the ambiguity. A D2O exchange experiment or variable-temperature study can help, but these require additional data.

ステップ5: Compile Functional Group Inventory

Assemble all findings into a structured report:

  1. List confirmed functional groups: Groups with strong, unambiguous absorptions in the diagnostic region (e.g., sharp C=O at 1715 cm-1 = ketone or aldehyde).
  2. List tentative assignments: Groups with weaker evidence or overlapping absorptions that could be explained by more than one functional group.
  3. List absent functional groups: Groups whose characteristic strong absorptions are clearly missing from the spectrum (e.g., no broad O-H band means no free alcohol or carboxylic acid).
  4. Note discrepancies: Any absorptions that do not fit the proposed functional group set, or expected absorptions that are missing.
  5. Cross-reference: Compare the IR-derived functional group inventory with information from other techniques (NMR, MS, UV-Vis) if available.

期待結果: A complete functional group inventory categorized by confidence level, with specific frequencies and intensities cited as evidence for each assignment.

失敗時: If the inventory is incomplete or contradictory, identify which additional experiments (ATR vs. KBr comparison, variable concentration, D2O exchange) would resolve the ambiguities.

バリデーション

  • Spectrum quality assessed (baseline, resolution, artifacts, y-axis format)
  • Solvent, preparation-method, and atmospheric artifacts identified and excluded
  • All absorptions in the diagnostic region (4000--1500 cm-1) assigned or flagged
  • Carbonyl region analyzed with specific sub-type assignment where possible
  • Fingerprint region examined for confirmatory evidence
  • Hydrogen bonding effects evaluated and their influence on peak shape/position documented
  • Functional group inventory compiled with confidence levels
  • Absent functional groups explicitly noted (negative evidence is informative)
  • Assignments cross-referenced with other available spectroscopic data

よくある落とし穴

  • Ignoring preparation artifacts: KBr moisture (broad 3400 cm-1), Nujol C-H (2850--2950 cm-1), and ATR intensity distortion at low wavenumbers all mimic or obscure real sample absorptions. Always consider the preparation method.
  • Over-interpreting the fingerprint region: The region below 1500 cm-1 is complex and overlapping. Use it for confirmation, not primary identification. Avoid assigning every peak.
  • Confusing atmospheric CO2 with sample peaks: The sharp doublet near 2350 cm-1 is almost always atmospheric CO2, not a sample absorption. Background subtraction should remove it, but verify.
  • Neglecting band intensity and width: A strong, broad absorption has different diagnostic value than a weak, sharp peak at the same frequency. Report intensity (strong/medium/weak) and shape (sharp/broad) alongside frequency.
  • Single-peak assignments: Never identify a functional group from a single absorption alone. Carbonyl groups, for example, should be supported by additional bands (C-O for esters, N-H for amides, C-H for aldehydes).
  • Assuming absence from weak absorption: Some functional groups produce inherently weak IR absorptions (symmetric C=C, triple bonds in symmetric alkynes). Absence of a peak does not always mean absence of the group.

関連スキル

  • interpret-nmr-spectrum -- determine detailed connectivity and hydrogen environments
  • interpret-mass-spectrum -- establish molecular formula and fragmentation pattern
  • interpret-uv-vis-spectrum -- characterize chromophores complementing IR functional group data
  • interpret-raman-spectrum -- obtain complementary vibrational data for IR-inactive modes
  • plan-spectroscopic-analysis -- select and sequence spectroscopic techniques before data acquisition

Dépôt GitHub

pjt222/agent-almanac
Chemin: i18n/ja/skills/interpret-ir-spectrum
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agentsagentskillsai-assisted-developmentclaude-codeskillsteams

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