nf-core_mcp
MCP server for managing nf-core pipelines. nf-core_mcp is a Model Context Protocol (MCP) server maintained by wjlim. It connects to MCP-compatible clients such as Claude Desktop, Cursor, Cline, and other agents that speak the protocol. It exposes 5 tools, including list-pipelines, get-pipeline-modules, search-pipelines, pipeline-config and pipeline-workflow, that an agent can call directly. It is categorized under Tool/Server and DevOps/Workflow.
What is this MCP
This MCP server is designed to manage and navigate nf-core pipeline repositories, providing tools to list, search, and access pipeline configurations and workflows.
How to use this MCP
Install via npm or Docker, clone nf-core repositories into a workspace, and use commands likelist-pipelines, get-pipeline-modules, and search-pipelines to interact with the pipelines.
What this MCP can be used for
It can be used to streamline the management of nf-core pipelines, enabling easy access to configurations, workflows, and modules, and facilitating search across pipeline files.
AIMCP authority
DR and traffic signal for the AIMCP public domain.
Frequently asked questions
What is the nf-core_mcp MCP server?
nf-core_mcp is a Model Context Protocol server from wjlim. It lets MCP-compatible AI clients call its tools over a standard interface, so agents like Claude, Cursor, and Cline can use it without custom integration.
How do I connect nf-core_mcp to my AI client?
Add nf-core_mcp to your client's MCP configuration using the stdio or SSE connection shown in the usage examples on this page, then restart the client to load the server.
What tools does nf-core_mcp provide?
nf-core_mcp provides 5 tools: list-pipelines, get-pipeline-modules, search-pipelines, pipeline-config and pipeline-workflow.
Is nf-core_mcp free to use?
nf-core_mcp is listed on AIMCP for free. Any API keys or accounts required by the underlying service are set by its provider.
Vernclaw Plugins for OpenClaw
Ready-to-use connectors for SEO data, social reading & content generation. Pay-as-you-go credits with audit logs.