mcp-nextflow

What is this MCP

This is a Model Context Protocol (MCP) server designed specifically for Nextflow development and testing. It provides tools for building Nextflow from source, running tests, managing the development environment, and accessing documentation.

How to use this MCP

Install via FastMCP CLI (pip install fastmcp) and configure with your local Nextflow repository path. The MCP can be used through Claude Desktop or Cursor IDE by selecting it from the tools menu or referencing it in chat commands.

What this MCP can be used for

Primarily for Nextflow core development tasks like running integration tests, plugin tests, building from source, and managing the development environment. It's specifically designed for Nextflow contributors, not pipeline authors.