pydeseq2
About
PyDESeq2 performs differential gene expression analysis on bulk RNA-seq count data using Wald tests and FDR correction. Use it to identify DE genes between conditions, handle multi-factor designs, and generate volcano/MA plots within Python pipelines. It's ideal for converting R DESeq2 workflows or integrating analysis into a Python-based bioinformatics workflow.
Quick Install
Claude Code
Recommendednpx skills add ricable/ultimate-ai-agent -a claude-code/plugin add https://github.com/ricable/ultimate-ai-agentgit clone https://github.com/ricable/ultimate-ai-agent.git ~/.claude/skills/pydeseq2Copy and paste this command in Claude Code to install this skill
GitHub Repository
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