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write-testthat-tests

pjt222
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Testingtesting

About

This Claude Skill generates comprehensive testthat (edition 3) unit tests for R package functions. It helps developers add tests for new functions, increase coverage for existing code, and set up test infrastructure. The skill covers test organization, expectations, mocking, snapshot tests, and parameterized testing.

Quick Install

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Documentation

Write testthat Tests

Create comprehensive tests for R package functions using testthat edition 3.

When to Use

  • Adding tests for new package functions
  • Increasing test coverage for existing code
  • Writing regression tests for bug fixes
  • Setting up test infrastructure for a new package

Inputs

  • Required: R functions to test
  • Required: Expected behavior and edge cases
  • Optional: Test fixtures or sample data
  • Optional: Target coverage percentage (default: 80%)

Procedure

Step 1: Set Up Test Infrastructure

If not already done:

usethis::use_testthat(edition = 3)

This creates tests/testthat.R and tests/testthat/ directory.

Got: tests/testthat.R and tests/testthat/ directory created. DESCRIPTION has Config/testthat/edition: 3 set.

If fail: If usethis is not available, manually create tests/testthat.R containing library(testthat); library(packagename); test_check("packagename") and add tests/testthat/ directory.

Step 2: Create Test File

usethis::use_test("function_name")

This creates tests/testthat/test-function_name.R with a template.

Got: Test file created at tests/testthat/test-function_name.R with a placeholder test_that() block ready to fill in.

If fail: If usethis::use_test() is not available, manually create the file. Follow the naming convention test-<function_name>.R.

Step 3: Write Basic Tests

test_that("weighted_mean computes correct result", {
  expect_equal(weighted_mean(1:3, c(1, 1, 1)), 2)
  expect_equal(weighted_mean(c(10, 20), c(1, 3)), 17.5)
})

test_that("weighted_mean handles NA values", {
  expect_equal(weighted_mean(c(1, NA, 3), c(1, 1, 1), na.rm = TRUE), 2)
  expect_true(is.na(weighted_mean(c(1, NA, 3), c(1, 1, 1), na.rm = FALSE)))
})

test_that("weighted_mean validates input", {
  expect_error(weighted_mean("a", 1), "numeric")
  expect_error(weighted_mean(1:3, 1:2), "length")
})

Got: Basic tests cover correct output for typical inputs, NA handling behavior, and input validation error messages.

If fail: If tests fail immediately, verify the function is loaded (devtools::load_all()). If error messages do not match, use a regex pattern in expect_error() instead of an exact string.

Step 4: Test Edge Cases

test_that("weighted_mean handles edge cases", {
  # Empty input
  expect_error(weighted_mean(numeric(0), numeric(0)))

  # Single value
  expect_equal(weighted_mean(5, 1), 5)

  # Zero weights
  expect_true(is.nan(weighted_mean(1:3, c(0, 0, 0))))

  # Very large values
  expect_equal(weighted_mean(c(1e15, 1e15), c(1, 1)), 1e15)

  # Negative weights
  expect_error(weighted_mean(1:3, c(-1, 1, 1)))
})

Got: Edge cases are covered: empty input, single values, zero weights, extreme values, and invalid inputs. Each edge case has a clear expected behavior.

If fail: If the function does not handle an edge case as expected, decide whether to fix the function or adjust the test. Document the intended behavior for ambiguous cases.

Step 5: Use Fixtures for Complex Tests

Create tests/testthat/fixtures/ for test data:

# tests/testthat/helper.R (loaded automatically)
create_test_data <- function() {
  data.frame(
    x = c(1, 2, 3, NA, 5),
    group = c("a", "a", "b", "b", "b")
  )
}
# In test file
test_that("process_data works with grouped data", {
  test_data <- create_test_data()
  result <- process_data(test_data)
  expect_s3_class(result, "data.frame")
  expect_equal(nrow(result), 2)
})

Got: Fixtures provide consistent test data across multiple test files. Helper functions in tests/testthat/helper.R are loaded automatically by testthat.

If fail: If helper functions are not found, ensure the file is named helper.R (not helpers.R) and is located in tests/testthat/. Restart the R session if needed.

Step 6: Mock External Dependencies

test_that("fetch_data handles API errors", {
  local_mocked_bindings(
    api_call = function(...) stop("Connection refused")
  )
  expect_error(fetch_data("endpoint"), "Connection refused")
})

test_that("fetch_data returns parsed data", {
  local_mocked_bindings(
    api_call = function(...) list(data = list(value = 42))
  )
  result <- fetch_data("endpoint")
  expect_equal(result$value, 42)
})

Got: External dependencies (APIs, databases, network calls) are mocked so tests run without real connections. Mock return values exercise the function's data processing logic.

If fail: If local_mocked_bindings() fails, ensure the function being mocked is accessible in the test scope. For functions in other packages, use the .package argument.

Step 7: Snapshot Tests for Complex Output

test_that("format_report produces expected output", {
  expect_snapshot(format_report(test_data))
})

test_that("plot_results creates expected plot", {
  expect_snapshot_file(
    save_plot(plot_results(test_data), "test-plot.png"),
    "expected-plot.png"
  )
})

Got: Snapshot files are created in tests/testthat/_snaps/. First run creates the baseline; subsequent runs compare against it.

If fail: If snapshots fail after an intentional change, update them with testthat::snapshot_accept(). For cross-platform differences, use the variant parameter to maintain platform-specific snapshots.

Step 8: Use Skip Conditions

test_that("database query works", {
  skip_on_cran()
  skip_if_not(has_db_connection(), "No database available")

  result <- query_db("SELECT 1")
  expect_equal(result[[1]], 1)
})

test_that("parallel computation works", {
  skip_on_os("windows")
  skip_if(parallel::detectCores() < 2, "Need multiple cores")

  result <- parallel_compute(1:100)
  expect_length(result, 100)
})

Got: Tests that require special environments (network, database, multiple cores) are guarded with skip conditions. These tests run locally but are skipped on CRAN or restricted CI environments.

If fail: If tests fail on CRAN or CI but pass locally, add the appropriate skip_on_cran(), skip_on_os(), or skip_if_not() guard at the top of the test_that() block.

Step 9: Run Tests and Check Coverage

# Run all tests
devtools::test()

# Run specific test file
devtools::test_active_file()  # in RStudio
testthat::test_file("tests/testthat/test-function_name.R")

# Check coverage
covr::package_coverage()
covr::report()

Got: All tests pass with devtools::test(). Coverage report shows the target percentage is met (aim for >80%).

If fail: If tests fail, read the test output for specific assertion failures. If coverage is below target, use covr::report() to identify untested code paths and add tests for them.

Validation

  • All tests pass with devtools::test()
  • Coverage exceeds target percentage
  • Every exported function has at least one test
  • Error conditions are tested
  • Edge cases are covered (NA, NULL, empty, boundary values)
  • No tests depend on external state or order of execution

Pitfalls

  • Tests depending on each other: Each test_that() block must be independent
  • Hardcoded file paths: Use testthat::test_path() for test fixtures
  • Floating point comparison: Use expect_equal() (has tolerance) not expect_identical()
  • Testing private functions: Test through the public API when possible. Use ::: sparingly.
  • Snapshot tests in CI: Snapshots are platform-sensitive. Use variant parameter for cross-platform.
  • Forgetting skip_on_cran(): Tests requiring network, databases, or long runtime must skip on CRAN

Examples

# Pattern: test file mirrors R/ file
# R/weighted_mean.R -> tests/testthat/test-weighted_mean.R

# Pattern: descriptive test names
test_that("weighted_mean returns NA when na.rm = FALSE and input contains NA", {
  result <- weighted_mean(c(1, NA), c(1, 1), na.rm = FALSE)
  expect_true(is.na(result))
})

# Pattern: testing warnings
test_that("deprecated_function emits deprecation warning", {
  expect_warning(deprecated_function(), "deprecated")
})

Related Skills

  • create-r-package - set up test infrastructure as part of package creation
  • write-roxygen-docs - document the functions you test
  • setup-github-actions-ci - run tests automatically on push
  • submit-to-cran - CRAN requires tests to pass on all platforms

GitHub Repository

pjt222/agent-almanac
Path: i18n/caveman-lite/skills/write-testthat-tests
0
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