bio-workflows-microbiome-pipeline
About
This skill provides an end-to-end 16S/ITS amplicon analysis pipeline, processing FASTQ reads through ASV inference with DADA2, taxonomy assignment, diversity analysis, and differential abundance testing with ALDEx2. It orchestrates multiple microbiome-specific tools into a complete workflow for developers. Use this when you need a standardized, reproducible analysis for microbiome sequencing data from raw reads to statistical results.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-workflows-microbiome-pipelineCopy and paste this command in Claude Code to install this skill
GitHub Repository
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