pysam
About
pysam is a Python genomic file toolkit for reading, writing, and analyzing common NGS data formats like SAM/BAM, VCF, and FASTA. It provides a Pythonic interface to htslib for tasks such as extracting regions, calculating coverage, and executing samtools commands. Use this skill in bioinformatics pipelines for alignment processing, variant analysis, and sequence manipulation.
Quick Install
Claude Code
Recommendednpx skills add K-Dense-AI/claude-scientific-skills -a claude-code/plugin add https://github.com/K-Dense-AI/claude-scientific-skillsgit clone https://github.com/K-Dense-AI/claude-scientific-skills.git ~/.claude/skills/pysamCopy and paste this command in Claude Code to install this skill
GitHub Repository
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