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bio-atac-seq-differential-accessibility

GPTomics
Updated 4 days ago
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About

This skill identifies differentially accessible chromatin regions from ATAC-seq data using either DiffBind or DESeq2. It's designed for developers comparing chromatin accessibility between experimental conditions like treatment groups, cell types, or developmental stages. The tool is implemented in R and requires checking version compatibility for packages like DESeq2 and GenomicRanges before use.

Quick Install

Claude Code

Recommended
Primary
npx skills add GPTomics/bioSkills -a claude-code
Plugin CommandAlternative
/plugin add https://github.com/GPTomics/bioSkills
Git CloneAlternative
git clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-atac-seq-differential-accessibility

Copy and paste this command in Claude Code to install this skill

GitHub Repository

GPTomics/bioSkills
Path: atac-seq/differential-accessibility
0

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