bio-workflows-gwas-pipeline
About
This skill provides an end-to-end GWAS pipeline using PLINK2, handling quality control, population structure correction, and association testing. It's designed for developers running genome-wide association studies on case-control or quantitative traits from VCF files. The workflow includes defined checkpoints for sample quality, stratification bias, and association results validation.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-workflows-gwas-pipelineCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the bio-workflows-gwas-pipeline skill?
bio-workflows-gwas-pipeline is a Claude Skill by GPTomics. Skills package instructions and resources that Claude loads on demand, so Claude can perform bio-workflows-gwas-pipeline-related tasks without extra prompting.
How do I install bio-workflows-gwas-pipeline?
Use the install commands on this page: add bio-workflows-gwas-pipeline to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does bio-workflows-gwas-pipeline belong to?
bio-workflows-gwas-pipeline is in the Testing category, tagged ai, testing and automation.
Is bio-workflows-gwas-pipeline free to use?
Yes. bio-workflows-gwas-pipeline is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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