pysam
About
Pysam is a Python toolkit for processing genomic data, enabling read/write operations on SAM/BAM/CRAM, VCF/BCF, and FASTA/FASTQ files. It provides a Pythonic interface to htslib for tasks like region extraction, coverage calculation, and pileup analysis within NGS pipelines. Use this skill when building bioinformatics workflows for alignment processing, variant analysis, or sequencing data quality control.
Quick Install
Claude Code
Recommendednpx skills add drshailesh88/integrated_content_OS -a claude-code/plugin add https://github.com/drshailesh88/integrated_content_OSgit clone https://github.com/drshailesh88/integrated_content_OS.git ~/.claude/skills/pysamCopy and paste this command in Claude Code to install this skill
GitHub Repository
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