deeptools
About
deeptools is a Python toolkit for NGS data analysis, enabling BAM to bigWig conversion, quality control (correlation, PCA, fingerprints), and generation of heatmaps/profiles for genomic features. Use it to process and visualize data from experiments like ChIP-seq, RNA-seq, and ATAC-seq. It's ideal for developers needing to perform standardized QC and create publication-ready plots from sequencing alignments.
Quick Install
Claude Code
Recommendednpx skills add aiskillstore/marketplace -a claude-code/plugin add https://github.com/aiskillstore/marketplacegit clone https://github.com/aiskillstore/marketplace.git ~/.claude/skills/deeptoolsCopy and paste this command in Claude Code to install this skill
GitHub Repository
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