Back to Skills

write-testthat-tests

pjt222
Updated 2 days ago
1 views
17
2
17
View on GitHub
Testingtesting

About

This skill generates comprehensive testthat (edition 3) test suites for R package functions. It covers test organization, expectations, mocking, snapshot tests, and helps achieve high code coverage. Use it when adding tests for new functions, increasing coverage for existing code, writing regression tests, or setting up test infrastructure.

Quick Install

Claude Code

Recommended
Primary
npx skills add pjt222/agent-almanac -a claude-code
Plugin CommandAlternative
/plugin add https://github.com/pjt222/agent-almanac
Git CloneAlternative
git clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/write-testthat-tests

Copy and paste this command in Claude Code to install this skill

Documentation

Write testthat Tests

Comprehensive tests for R pkg fns via testthat ed 3.

Use When

  • New pkg fns
  • Increase coverage for existing
  • Regression tests for bug fixes
  • Setup test infra for new pkg

In

  • Required: R fns to test
  • Required: Expected behavior + edge cases
  • Optional: Test fixtures|sample data
  • Optional: Target coverage % (default: 80%)

Do

Step 1: Setup Test Infra

If not done:

usethis::use_testthat(edition = 3)

Creates tests/testthat.R + tests/testthat/ dir.

Got: tests/testthat.R + tests/testthat/ dir created. DESCRIPTION has Config/testthat/edition: 3.

If err: usethis unavail → manually create tests/testthat.R w/ library(testthat); library(packagename); test_check("packagename") + add tests/testthat/.

Step 2: Test File

usethis::use_test("function_name")

Creates tests/testthat/test-function_name.R w/ template.

Got: Test file at tests/testthat/test-function_name.R w/ placeholder test_that() ready to fill.

If err: usethis::use_test() unavail → manual. Naming: test-<function_name>.R.

Step 3: Basic Tests

test_that("weighted_mean computes correct result", {
  expect_equal(weighted_mean(1:3, c(1, 1, 1)), 2)
  expect_equal(weighted_mean(c(10, 20), c(1, 3)), 17.5)
})

test_that("weighted_mean handles NA values", {
  expect_equal(weighted_mean(c(1, NA, 3), c(1, 1, 1), na.rm = TRUE), 2)
  expect_true(is.na(weighted_mean(c(1, NA, 3), c(1, 1, 1), na.rm = FALSE)))
})

test_that("weighted_mean validates input", {
  expect_error(weighted_mean("a", 1), "numeric")
  expect_error(weighted_mean(1:3, 1:2), "length")
})

Got: Basic tests cover correct out for typical inputs, NA handling, input valid err msgs.

If err: Tests fail immediately → verify fn loaded (devtools::load_all()). Err msgs don't match → regex pattern in expect_error() not exact string.

Step 4: Edge Cases

test_that("weighted_mean handles edge cases", {
  # Empty input
  expect_error(weighted_mean(numeric(0), numeric(0)))

  # Single value
  expect_equal(weighted_mean(5, 1), 5)

  # Zero weights
  expect_true(is.nan(weighted_mean(1:3, c(0, 0, 0))))

  # Very large values
  expect_equal(weighted_mean(c(1e15, 1e15), c(1, 1)), 1e15)

  # Negative weights
  expect_error(weighted_mean(1:3, c(-1, 1, 1)))
})

Got: Edge cases covered: empty, single vals, zero weights, extreme, invalid. Each w/ clear expected behavior.

If err: Fn doesn't handle edge case as expected → fix fn or adjust test. Doc intended behavior for ambiguous.

Step 5: Fixtures for Complex

Create tests/testthat/fixtures/ for test data:

# tests/testthat/helper.R (loaded automatically)
create_test_data <- function() {
  data.frame(
    x = c(1, 2, 3, NA, 5),
    group = c("a", "a", "b", "b", "b")
  )
}
# In test file
test_that("process_data works with grouped data", {
  test_data <- create_test_data()
  result <- process_data(test_data)
  expect_s3_class(result, "data.frame")
  expect_equal(nrow(result), 2)
})

Got: Fixtures provide consistent test data across files. Helpers in tests/testthat/helper.R loaded auto by testthat.

If err: Helpers not found → ensure file helper.R (not helpers.R) + located in tests/testthat/. Restart R sess if needed.

Step 6: Mock External Deps

test_that("fetch_data handles API errors", {
  local_mocked_bindings(
    api_call = function(...) stop("Connection refused")
  )
  expect_error(fetch_data("endpoint"), "Connection refused")
})

test_that("fetch_data returns parsed data", {
  local_mocked_bindings(
    api_call = function(...) list(data = list(value = 42))
  )
  result <- fetch_data("endpoint")
  expect_equal(result$value, 42)
})

Got: External deps (APIs, DBs, net calls) mocked → tests run w/o real connections. Mock returns exercise data processing logic.

If err: local_mocked_bindings() fails → ensure mocked fn accessible in test scope. Other pkgs → use .package arg.

Step 7: Snapshot Tests for Complex Out

test_that("format_report produces expected output", {
  expect_snapshot(format_report(test_data))
})

test_that("plot_results creates expected plot", {
  expect_snapshot_file(
    save_plot(plot_results(test_data), "test-plot.png"),
    "expected-plot.png"
  )
})

Got: Snapshot files created in tests/testthat/_snaps/. First run creates baseline; subsequent compare.

If err: Snapshots fail after intentional change → update w/ testthat::snapshot_accept(). Cross-platform diffs → variant param to maintain platform-specific.

Step 8: Skip Conditions

test_that("database query works", {
  skip_on_cran()
  skip_if_not(has_db_connection(), "No database available")

  result <- query_db("SELECT 1")
  expect_equal(result[[1]], 1)
})

test_that("parallel computation works", {
  skip_on_os("windows")
  skip_if(parallel::detectCores() < 2, "Need multiple cores")

  result <- parallel_compute(1:100)
  expect_length(result, 100)
})

Got: Tests requiring special env (net, DB, multi cores) guarded w/ skip. Run locally, skip on CRAN|restricted CI.

If err: Tests fail on CRAN|CI but pass locally → add skip_on_cran(), skip_on_os(), skip_if_not() at top of test_that().

Step 9: Run + Coverage

# Run all tests
devtools::test()

# Run specific test file
devtools::test_active_file()  # in RStudio
testthat::test_file("tests/testthat/test-function_name.R")

# Check coverage
covr::package_coverage()
covr::report()

Got: All tests pass devtools::test(). Coverage report shows target met (aim > 80%).

If err: Tests fail → read out for assertion failures. Coverage below target → covr::report() to ID untested paths + add tests.

Check

  • All tests pass devtools::test()
  • Coverage > target %
  • Every exported fn has 1+ test
  • Err conditions tested
  • Edge cases covered (NA, NULL, empty, boundary)
  • No tests depend on external state|order

Traps

  • Tests depend on each other: Each test_that() independent
  • Hardcoded paths: testthat::test_path() for fixtures
  • Float compare: expect_equal() (tolerance) not expect_identical()
  • Test private fns: Test through public API. ::: sparingly.
  • Snapshot in CI: Platform-sensitive. variant for cross-platform.
  • Forget skip_on_cran(): Net|DB|long runtime → skip on CRAN

Examples

# Pattern: test file mirrors R/ file
# R/weighted_mean.R -> tests/testthat/test-weighted_mean.R

# Pattern: descriptive test names
test_that("weighted_mean returns NA when na.rm = FALSE and input contains NA", {
  result <- weighted_mean(c(1, NA), c(1, 1), na.rm = FALSE)
  expect_true(is.na(result))
})

# Pattern: testing warnings
test_that("deprecated_function emits deprecation warning", {
  expect_warning(deprecated_function(), "deprecated")
})

  • create-r-package — setup test infra as part of pkg creation
  • write-roxygen-docs — doc fns you test
  • setup-github-actions-ci — auto run tests on push
  • submit-to-cran — CRAN requires tests pass on all platforms

GitHub Repository

pjt222/agent-almanac
Path: i18n/caveman-ultra/skills/write-testthat-tests
0
agentsagentskillsai-assisted-developmentclaude-codeskillsteams

Related Skills

evaluating-llms-harness

Testing

This Claude Skill runs the lm-evaluation-harness to benchmark LLMs across 60+ standardized academic tasks like MMLU and GSM8K. It's designed for developers to compare model quality, track training progress, or report academic results. The tool supports various backends including HuggingFace and vLLM models.

View skill

cloudflare-cron-triggers

Testing

This skill provides comprehensive knowledge for implementing Cloudflare Cron Triggers to schedule Workers using cron expressions. It covers setting up periodic tasks, maintenance jobs, and automated workflows while handling common issues like invalid cron expressions and timezone problems. Developers can use it for configuring scheduled handlers, testing cron triggers, and integrating with Workflows and Green Compute.

View skill

webapp-testing

Testing

This Claude Skill provides a Playwright-based toolkit for testing local web applications through Python scripts. It enables frontend verification, UI debugging, screenshot capture, and log viewing while managing server lifecycles. Use it for browser automation tasks but run scripts directly rather than reading their source code to avoid context pollution.

View skill

finishing-a-development-branch

Testing

This skill helps developers complete finished work by verifying tests pass and then presenting structured integration options. It guides the workflow for merging, creating PRs, or cleaning up branches after implementation is done. Use it when your code is ready and tested to systematically finalize the development process.

View skill