scanpy
About
Scanpy is a Python toolkit for analyzing single-cell RNA-seq data, built on the AnnData object for managing expression matrices and metadata. It enables key analyses like clustering, dimensionality reduction (PCA/UMAP), and trajectory inference to identify cell types and states. Use it to process high-dimensional gene expression data for visualizing cell populations and discovering rare cell types.
Quick Install
Claude Code
Recommendednpx skills add tondevrel/scientific-agent-skills -a claude-code/plugin add https://github.com/tondevrel/scientific-agent-skillsgit clone https://github.com/tondevrel/scientific-agent-skills.git ~/.claude/skills/scanpyCopy and paste this command in Claude Code to install this skill
GitHub Repository
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