pydeseq2
About
pydeseq2 performs differential gene expression analysis on bulk RNA-seq count data using a Python implementation of DESeq2. It enables workflows for single or multi-factor designs, including Wald tests, FDR correction, and optional apeGLM shrinkage. Use this skill to analyze RNA-seq data, compare conditions, account for covariates, or convert R-based DESeq2 pipelines to Python.
Quick Install
Claude Code
Recommendednpx skills add mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- -a claude-code/plugin add https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-git clone https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-.git ~/.claude/skills/pydeseq2Copy and paste this command in Claude Code to install this skill
GitHub Repository
Related Skills
evaluating-llms-harness
TestingThis Claude Skill runs the lm-evaluation-harness to benchmark LLMs across 60+ standardized academic tasks like MMLU and GSM8K. It's designed for developers to compare model quality, track training progress, or report academic results. The tool supports various backends including HuggingFace and vLLM models.
cloudflare-cron-triggers
TestingThis skill provides comprehensive knowledge for implementing Cloudflare Cron Triggers to schedule Workers using cron expressions. It covers setting up periodic tasks, maintenance jobs, and automated workflows while handling common issues like invalid cron expressions and timezone problems. Developers can use it for configuring scheduled handlers, testing cron triggers, and integrating with Workflows and Green Compute.
webapp-testing
TestingThis Claude Skill provides a Playwright-based toolkit for testing local web applications through Python scripts. It enables frontend verification, UI debugging, screenshot capture, and log viewing while managing server lifecycles. Use it for browser automation tasks but run scripts directly rather than reading their source code to avoid context pollution.
finishing-a-development-branch
TestingThis skill helps developers complete finished work by verifying tests pass and then presenting structured integration options. It guides the workflow for merging, creating PRs, or cleaning up branches after implementation is done. Use it when your code is ready and tested to systematically finalize the development process.
