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bio-imaging-mass-cytometry-data-preprocessing

GPTomics
Updated 4 days ago
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About

This Claude Skill handles imaging mass cytometry (IMC) and MIBI data preprocessing, starting from raw MCD/TIFF files. It performs essential steps like hot pixel removal, image normalization, and channel cropping to prepare images for downstream segmentation and analysis. Use it when beginning IMC analysis workflows to clean and standardize your imaging data.

Quick Install

Claude Code

Recommended
Primary
npx skills add GPTomics/bioSkills -a claude-code
Plugin CommandAlternative
/plugin add https://github.com/GPTomics/bioSkills
Git CloneAlternative
git clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-imaging-mass-cytometry-data-preprocessing

Copy and paste this command in Claude Code to install this skill

GitHub Repository

GPTomics/bioSkills
Path: imaging-mass-cytometry/data-preprocessing
0

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