validate-analytical-method
About
This Claude Skill validates chromatographic analytical methods according to ICH Q2(R2) regulatory guidelines. It guides developers through defining the validation scope, establishing specificity via forced degradation, and determining linearity, accuracy, precision, and detection limits. Use this skill to structure and document a complete method validation for regulatory submission.
Quick Install
Claude Code
Recommendednpx skills add pjt222/agent-almanac -a claude-code/plugin add https://github.com/pjt222/agent-almanacgit clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/validate-analytical-methodCopy and paste this command in Claude Code to install this skill
Documentation
Validate Analytical Method
Formal valid of chromatographic method per ICH Q2(R2) → scope by category → specificity via forced degradation → linearity + range → accuracy + precision → LOD/LOQ + robustness → regulatory compliance.
Use When
- New chromatographic method developed → must validate before routine
- Compendial method verified for suitability in specific lab
- Validated method significant changes → partial|full re-valid
- Prep validation pkg for regulatory submission (NDA, ANDA, MAA, IND)
- Transferring method to new lab|instrument platform
In
Required
- Developed method: Fully optimized + documented (col, mobile phase, gradient, detector, etc.)
- Method category: Assay active, quant impurity, limit impurity, ID test
- Analyte ref stds: Primary refs w/ COA + assigned purity
- Sample matrix: Representative samples + placebo|blank for specificity
Optional
- Regulatory guidance: Beyond ICH Q2 (USP <1225>, FDA, EMA)
- Forced degradation samples: Pre-stressed (acid, base, ox, heat, light) if not prepared
- Validation protocol: Pre-approved w/ acceptance criteria (req in GMP)
- Transfer pkg: If method transfer → originating lab's report
Do
Step 1: Define Scope per ICH Q2(R2)
ID method category + required validation params.
| Parameter | Cat I: Assay | Cat II: Impurity (Quant) | Cat III: Impurity (Limit) | Cat IV: Identification |
|---|---|---|---|---|
| Specificity | Yes | Yes | Yes | Yes |
| Linearity | Yes | Yes | No | No |
| Range | Yes | Yes | No | No |
| Accuracy | Yes | Yes | No | No |
| Precision (repeatability) | Yes | Yes | No | No |
| Precision (intermediate) | Yes | Yes | No | No |
| LOD | No | May be needed | Yes | No |
| LOQ | No | Yes | No | No |
| Robustness | Yes | Yes | Yes | No |
- Classify method → 4 ICH categories per intended purpose
- Per table, ID required params
- Define acceptance criteria per param before exp work. Typical:
- Linearity: R² >= 0.999 (assay), >= 0.99 (impurity)
- Accuracy: recovery 98.0-102.0% (assay), 80-120% at LOQ
- Repeatability: RSD <= 2.0% (assay), <= 10% at LOQ
- Intermediate: RSD <= 3.0% (assay)
- Draft protocol w/ all params, designs, criteria
- GMP → protocol approval before exp work
Got: Approved protocol w/ method category, required params, designs, pre-defined criteria.
If err: Method category ambiguous (combined assay + impurity) → validate for most stringent. Consult regulatory guidance per submission type.
Step 2: Specificity + Selectivity
- Prep solutions:
- Blank (solvent|diluent)
- Placebo (matrix w/o analyte, e.g., excipients)
- Ref std at working conc
- Spiked placebo (matrix + ref)
- Forced degradation samples (if not avail)
- Forced degradation → potential degradation products:
| Stress Condition | Typical Treatment | Target Degradation |
|---|---|---|
| Acid hydrolysis | 0.1-1 N HCl, 60-80 C, 1-24 h | 5-20% |
| Base hydrolysis | 0.1-1 N NaOH, 60-80 C, 1-24 h | 5-20% |
| Oxidation | 0.3-3% H2O2, RT-60 C, 1-24 h | 5-20% |
| Thermal | 60-80 C, solid state, 1-7 days | 5-20% |
| Photolytic | ICH Q1B (1.2M lux-hours, 200 Wh/m^2 UV) | 5-20% |
- Inject all + eval:
- No interfering peaks from blank|placebo at analyte RT
- Degradation products resolved from main analyte (Rs >= 1.5)
- Peak purity → DAD spectral purity index|MS
- Mass balance: assay + impurities + degradation = 95-105% initial
- Doc specificity w/ chromatograms from all conditions
Got: Method specific: no interferences, degradation resolved, peak purity confirmed, mass balance 95-105%.
If err: Degradation co-elutes w/ analyte → method not stability-indicating. Return to method dev → improve selectivity (pH, gradient, col chem) before validation.
Step 3: Linearity + Range
- 5+ conc levels spanning intended range:
- Assay: 80-120% of target
- Impurity: LOQ → 120-200% of spec limit
- Dissolution: 10-120% of label claim
- Each conc independent (not serial dilution) → best practice
- Inject each in triplicate (min duplicate)
- Linear regression of response (area|height) vs conc:
- Report slope, intercept, R²
- R² >= 0.999 assay; >= 0.99 impurity
- Eval residual plots:
- Random distribution around zero, no systematic pattern
- Curved → non-linearity → quadratic fit or narrower range
- Calc y-intercept as % of response at 100%:
- <= 2% of 100% response for assay
- Validated range = interval between low + high concs w/ linearity, accuracy, precision
Got: Linear regression R² >= 0.999 (assay)|>= 0.99 (impurity), random residuals, intercept <= 2% target, range defined.
If err: R² below criterion → check prep errors, detector non-linearity (too high conc), analyte instability. Repeat w/ fresh prep. Inherent non-linearity → polynomial calibration|narrow range.
Step 4: Accuracy
- Prep accuracy samples at 3 conc (80%, 100%, 120% target for assay; LOQ, mid, high for impurity)
- Per level → 3 independent replicates (min 9 determinations total)
- Drug substance: compare found vs known (gravimetric)
- Drug product: spiked placebo → add known to placebo + measure recovery
- % recovery per level:
- Recovery (%) = (found / added) x 100
- Acceptance:
| Method Type | Recovery Range | RSD at Each Level |
|---|---|---|
| Assay (drug substance) | 98.0-102.0% | <= 2.0% |
| Assay (drug product) | 98.0-102.0% | <= 2.0% |
| Impurity (quantitation) | 80-120% at LOQ, 90-110% at higher levels | <= 10% at LOQ, <= 5% at higher |
| Cleaning validation | 70-130% (or tighter per company SOP) | <= 15% |
- Report individual recoveries, mean, RSD per level
Got: Mean recovery within criteria all levels, RSD within limits.
If err: Recovery consistently high|low all levels → systematic err in ref std, sample prep, method (matrix effect → ion suppression in LC-MS). Erratic → investigate prep technique + analyte stability.
Step 5: Precision
3 levels:
- Repeatability (intra-day):
- 1 analyst, 1 instrument, 1 day
- 6 determinations at 100% or 3 levels x 3 replicates (same as accuracy)
- RSD <= 2.0% assay, <= 10% at LOQ for impurity
- Intermediate (inter-day|inter-analyst):
- Repeat repeatability w/ different analyst, day, (if avail) instrument
- Overall RSD combining both
- Overall RSD <= 3.0% assay
- Intermediate >> repeatability → investigate source (analyst, instrument cal, env)
- Reproducibility (method transfer|multi-site):
- Receiving lab → same protocol
- Compare across labs
- F-test (variance) + t-test (mean) or equivalence
| Precision Level | Design | Acceptance (Assay) | Acceptance (Impurity Quant) |
|---|---|---|---|
| Repeatability | n >= 6 at 100%, 1 analyst, 1 day | RSD <= 2.0% | RSD <= 10% at LOQ, <= 5% above |
| Intermediate | 2 analysts, 2 days (or 2 instruments) | RSD <= 3.0% | RSD <= 15% at LOQ, <= 10% above |
| Reproducibility | Multi-laboratory | Per protocol / transfer criteria | Per protocol / transfer criteria |
Got: Repeatability + intermediate RSDs within criteria. No statistically significant diff between analysts|days|instruments beyond allowed RSD.
If err: Intermediate >> repeatability → ID variable driving variance (analyst prep, ambient temp, instrument cal drift) → control before repeating.
Step 6: LOD, LOQ, Robustness
LOD + LOQ:
- Calc via S/N or std dev approach:
- LOD = 3.3 x (σ / S) → σ = SD of response at low conc, S = slope of cal
- LOQ = 10 x (σ / S)
- Alt: S/N → LOD = S/N >= 3, LOQ = S/N >= 10
- Confirm experimentally → prep solutions at calc'd LOD + LOQ + inject:
- LOD: detectable, not necessarily quantifiable w/ acceptable precision
- LOQ: 6 replicates → RSD <= 10% + accuracy 80-120%
- Report LOD + LOQ w/ method used
Robustness:
- ID critical params (5-7 factors):
- Mobile phase comp (+/- 2% organic)
- MP pH (+/- 0.2 units)
- Col temp (+/- 5 C)
- Flow rate (+/- 10%)
- Detection wavelength (+/- 2 nm)
- Col lot|batch (if avail)
- Vary each within range while holding others (or fractional factorial design for efficiency)
- Eval impact on sys suitability (RT, resolution, tailing, area)
- Params causing sys suitability fail w/in tested range → tightly control + doc as critical
- Summarize robustness in table: each varied param, range tested, impact on responses
Got: LOD + LOQ experimentally confirmed. Robustness done w/ critical params ID'd + control limits.
If err: LOQ precision > 10% RSD → method sensitivity insufficient. Options: increase inj volume, concentrate sample, improve cleanup, more sensitive detector. Param shows not robust (fails SST w/ small variation) → tighten control + flag during transfer.
Check
- Method category ID'd + all params per ICH Q2(R2)
- Validation protocol w/ pre-defined criteria
- Specificity demonstrated: no interferences, degradation resolved, peak purity
- Mass balance 95-105% for forced degradation
- Linearity R² >= 0.999 (assay)|>= 0.99 (impurity), residuals random
- Accuracy at 3 levels, recovery within criteria
- Repeatability RSD within limits (<= 2.0% assay)
- Intermediate RSD within limits (<= 3.0% assay)
- LOD + LOQ experimentally confirmed (LOQ precision <= 10% RSD)
- Robustness w/ critical params ID'd
- All raw data, calc, chromatograms in validation report
Traps
- Exp before protocol approval: GMP → data before protocol approval may not be acceptable to regulators. Always approve first.
- Serial dilutions for linearity: Propagates pipetting errs. Each conc independent from common stock for accurate linearity.
- Insufficient forced degradation: < 5% misses important products. > 30% → secondary products complicate. Target 5-20% per condition.
- Confuse repeatability + intermediate: Repeatability = same-day, same-analyst, same-instrument. Intermediate must vary one. Both required Cat I + II.
- Neglect LOQ verify step: Calc LOQ from cal curve insufficient. Must experimentally confirm acceptable precision + accuracy.
- Robustness late: Discovering method not robust after accuracy + precision wastes time + materials. Quick screen early → catch fragile params.
- Incomplete reports: Reviewers expect all raw data, chromatograms (not just tabulated nums), stat analysis, explicit pass/fail per param. Missing → deficiency letters.
→
develop-gc-method— GC method dev preceding validationdevelop-hplc-method— HPLC method dev preceding validationinterpret-chromatogram— reading chromatograms during validationtroubleshoot-separation— resolve issues during validationconduct-gxp-audit— auditing completed validation for GxPwrite-standard-operating-procedure— doc validated method as SOP
GitHub Repository
Related Skills
evaluating-llms-harness
TestingThis Claude Skill runs the lm-evaluation-harness to benchmark LLMs across 60+ standardized academic tasks like MMLU and GSM8K. It's designed for developers to compare model quality, track training progress, or report academic results. The tool supports various backends including HuggingFace and vLLM models.
cloudflare-cron-triggers
TestingThis skill provides comprehensive knowledge for implementing Cloudflare Cron Triggers to schedule Workers using cron expressions. It covers setting up periodic tasks, maintenance jobs, and automated workflows while handling common issues like invalid cron expressions and timezone problems. Developers can use it for configuring scheduled handlers, testing cron triggers, and integrating with Workflows and Green Compute.
webapp-testing
TestingThis Claude Skill provides a Playwright-based toolkit for testing local web applications through Python scripts. It enables frontend verification, UI debugging, screenshot capture, and log viewing while managing server lifecycles. Use it for browser automation tasks but run scripts directly rather than reading their source code to avoid context pollution.
finishing-a-development-branch
TestingThis skill helps developers complete finished work by verifying tests pass and then presenting structured integration options. It guides the workflow for merging, creating PRs, or cleaning up branches after implementation is done. Use it when your code is ready and tested to systematically finalize the development process.
