bio-metagenomics-kraken
About
This skill performs taxonomic classification of shotgun metagenomic reads using Kraken2, which rapidly assigns labels via k-mer matching against the RefSeq database. It's designed for the initial classification step prior to abundance estimation with tools like Bracken. Developers should use it when they need to identify which organisms are present in a raw metagenomic sample.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-metagenomics-krakenCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the bio-metagenomics-kraken skill?
bio-metagenomics-kraken is a Claude Skill by GPTomics. Skills package instructions and resources that Claude loads on demand, so Claude can perform bio-metagenomics-kraken-related tasks without extra prompting.
How do I install bio-metagenomics-kraken?
Use the install commands on this page: add bio-metagenomics-kraken to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does bio-metagenomics-kraken belong to?
bio-metagenomics-kraken is in the Other category, tagged ai and data.
Is bio-metagenomics-kraken free to use?
Yes. bio-metagenomics-kraken is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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