About
This skill clusters TCR/BCR clones by their CDR3 sequences using either GIANA or ClusTCR (both Faiss-based methods). It adds a `CDR3_Cluster` column to metadata for clonotype analysis, enabling identification of similar sequences and public clonotypes. Use it after ScRepCombiningExpression when VDJ data is present to analyze TCR convergence or prepare for epitope specificity analysis.
Quick Install
Claude Code
Recommendednpx skills add majiayu000/claude-skill-registry -a claude-code/plugin add https://github.com/majiayu000/claude-skill-registrygit clone https://github.com/majiayu000/claude-skill-registry.git ~/.claude/skills/cdr3clusteringCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the cdr3clustering skill?
cdr3clustering is a Claude Skill by majiayu000. Skills package instructions and resources that Claude loads on demand, so Claude can perform cdr3clustering-related tasks without extra prompting.
How do I install cdr3clustering?
Use the install commands on this page: add cdr3clustering to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does cdr3clustering belong to?
cdr3clustering is in the Other category, tagged ai and data.
Is cdr3clustering free to use?
Yes. cdr3clustering is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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