scanpy
About
The scanpy skill enables comprehensive single-cell RNA-seq analysis for developers, handling workflows from data loading (.h5ad/10X) through QC, normalization, clustering, and visualization. Use it to perform key analyses like PCA/UMAP dimensionality reduction, Leiden clustering, marker gene identification, and cell type annotation. It's ideal for developers building or automating complete scRNA-seq analysis pipelines within Claude Code.
Quick Install
Claude Code
Recommendednpx skills add Activer007/ordinary-claude-skills -a claude-code/plugin add https://github.com/Activer007/ordinary-claude-skillsgit clone https://github.com/Activer007/ordinary-claude-skills.git ~/.claude/skills/scanpyCopy and paste this command in Claude Code to install this skill
GitHub Repository
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