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interpret-raman-spectrum

pjt222
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About

This skill analyzes Raman spectra to identify molecular vibrations using polarizability selection rules, complementing IR spectroscopy. It's particularly useful for aqueous samples, symmetric vibrations, and centrosymmetric molecules where IR is limited. Key capabilities include comparing Raman vs IR modes, calculating depolarization ratios for symmetry insights, and matching reference spectra while mitigating fluorescence.

Quick Install

Claude Code

Recommended
Primary
npx skills add pjt222/agent-almanac -a claude-code
Plugin CommandAlternative
/plugin add https://github.com/pjt222/agent-almanac
Git CloneAlternative
git clone https://github.com/pjt222/agent-almanac.git ~/.claude/skills/interpret-raman-spectrum

Copy and paste this command in Claude Code to install this skill

Documentation

Interpret Raman Spectrum

Analyze Raman scattering → id mol vibrations, apply selection rules complementary to IR, integrate Raman + IR → comprehensive vibrational.

Use When

  • Samples difficult for IR (aqueous, sealed, remote sensing)
  • ID symmetric vibrations weak/inactive in IR
  • Complement IR via mutual exclusion (centrosymmetric mol)
  • Characterize C materials (graphene, CNT, diamond) via Raman bands
  • Inorganic, minerals, crystalline phases (Raman often > informative than IR)
  • Non-destructive in situ (no sample prep for many Raman)

In

  • Req: Raman data (Raman shift cm-1 vs int)
  • Req: Excitation laser λ (e.g., 532, 633, 785, 1064 nm)
  • Opt: IR of same sample → complementary
  • Opt: Polarization data (parallel + perpendicular → depolarization ratios)
  • Opt: Mol formula / compound class
  • Opt: Physical state (solid, liquid, soln, gas, thin film)

Do

Step 1: Quality + Artifacts

Evaluate reliability before peak analysis:

  1. Laser λ + fluorescence: Fluorescence = most common interference. Broad intense BG obscures Raman peaks. Shorter λ (532) → more fluorescence; longer (785, 1064) → less, weaker Raman (int scales λ^-4).
  2. S/N: Peaks distinguishable from noise? Weak scatterers → longer acquisition / higher power.
  3. Cosmic ray spikes: Sharp narrow spikes random pos = cosmic artifacts, not Raman. Appear in one of time-avg set; remove w/ spike filters.
  4. Baseline correction: Slope/curve (fluorescence / thermal) → subtract before measuring.
  5. Photodegradation: High power → damage/transform sample. Check spectral changes between successive acquisitions at same spot. Reduce power if degradation.
  6. Range: Standard 100-4000 cm-1. Low-freq cutoff depends on edge/notch filter blocking Rayleigh. Note truncation.

→ Quality assessed, fluorescence documented, artifacts (cosmic, baseline) ID'd / corrected, usable range confirmed.

If err: Fluorescence dominates (broad BG >> peaks) → recommend re-measure w/ longer λ (785 / 1064) or SERS. Sample degrades → reduce power / rotating stage.

Step 2: Raman-Active Modes + Selection Rules

Determine Raman-active + how complement IR:

  1. Raman rule: Vibration Raman-active if changes polarizability. Symmetric stretches (change mol vol) → typically strong Raman.
  2. IR rule (compare): Vibration IR-active if changes dipole moment. Asymmetric stretches → typically strong IR.
  3. Mutual exclusion: Mol w/ center of inversion (centrosymmetric) → no vibration both Raman-active + IR-active. Band in both → no center of symmetry.
  4. General complementarity: Even non-centrosymmetric → Raman-strong tend IR-weak + vv. Combined dataset > either alone.
  5. Raman-favored modes: Sym stretches (C-C, C=C, S-S, N=N), breathing modes of rings, stretches of homonuclear bonds (no dipole change → IR-inactive) → typically strong Raman.

→ Selection rules applied, Raman-active vs IR-active distinguished, mutual exclusion tested if centrosymmetric.

If err: Mol symmetry unknown → use combined Raman + IR to infer. Band in both w/ comparable int → not centrosymmetric.

Step 3: Raman Shift Positions

Assign bands → vibrational modes via characteristic freqs:

  1. C-H stretch (2800-3100 cm-1): Similar IR but Raman int differ. Aromatic + olefinic C-H (3000-3100) often > Raman than aliphatic.
  2. Triple bonds (2100-2260 cm-1): C≡C sym stretch strong Raman, often weak/absent IR. C≡N active in both.
  3. Double bond stretches:
Shift (cm-1)AssignmentRaman Intensity
1600--1680C=C stretchStrong
1650--1800C=O stretchMedium (weaker than IR)
1500--1600Aromatic C=CMedium to strong
  1. Aromatic ring modes:
Shift (cm-1)AssignmentNotes
990--1010Ring breathing (monosubstituted)Very strong, diagnostic
1000Ring breathing (sym. trisubstituted)Strong
1580--1600Ring stretchMedium
3050--3070Aromatic C-H stretchMedium
  1. Other characteristic:
Shift (cm-1)Assignment
430--550S-S stretch (disulfide)
570--705C-S stretch
800--1100C-C skeletal stretch
630--770C-Cl stretch
500--680C-Br stretch
200--400Metal-ligand stretch
  1. C materials: G band (~1580, graphitic sp2) + D band (~1350, defect/disorder) → diagnostic for C allotropes. 2D (~2700) → graphene layer count. Diamond sharp peak 1332.

→ All significant bands assigned to vibrational modes w/ ref to freq ranges.

If err: Band unassignable from tables → consult DBs (RRUFF minerals, SDBS organics). Unassigned → combination modes, overtones, lattice vibrations in crystalline.

Step 4: Compare Raman vs IR

Integrate two complementary techniques:

  1. Tabulate corresponding bands: Per mode → Raman shift, IR freq, rel int each technique.
  2. Modes in one only: Raman but not IR (or vv) → symmetry info. Sym stretches of non-polar bonds (S-S, C=C sym env) → Raman only.
  3. Resolve ambiguities: IR tentative (e.g., overlapping C-O + C-N fingerprint) → Raman may be clearer (diff rel int).
  4. Functional group confirm: Confirm IR-ID'd groups via Raman counterparts. Ester → C=O IR (~1735) + C-O-C Raman. Acid → broad OH IR + C=O both.
  5. Assess consistency: Raman + IR mutually consistent. Contradictions (band assigned sym stretch strong both for centrosymmetric) → err in assignment / symmetry.

→ Unified vibrational analysis table combining Raman+IR, func groups confirmed / refined by complementary.

If err: No IR → Raman alone useful but reduced certainty. Note assignments benefiting from IR confirm.

Step 5: Polarization + Document

Depolarization ratios → symmetry + compile final:

  1. Depolarization ratio (ρ): ρ = I⊥ / I∥, from polarized Raman.
    • ρ = 0-0.75 → polarized band. Totally symmetric vibrations (A-type) polarized.
    • ρ = 0.75 → depolarized. Non-totally-sym vibrations → ρ = 0.75.
  2. Symmetry assignment: Polarized bands → totally sym irrep of point group. Helps distinguish modes of diff sym at similar freqs.
  3. Compile: Complete table per observed:
    • Raman shift (cm-1)
    • Rel int (strong/medium/weak)
    • Depolarization ratio (if measured)
    • Assignment
    • Corresponding IR band (if observed)
  4. Compare ref spectra: Known compound → compare vs published (RRUFF, SDBS, NIST). Agreement ±3 cm-1 + matching rel int → identity.
  5. Report uncertainties: Flag tentative assignments, note which add'l exps (temp-dep Raman, resonance Raman, SERS) resolve ambiguity.

→ Complete analysis, all bands assigned, polarization → symmetry, results integrated w/ IR + other.

If err: No polarization → symmetry relies on freq+int alone. Note limitation + recommend polarized measurements if symmetry critical.

Check

  • Quality assessed (fluorescence, cosmic, baseline, photodegradation)
  • Selection rules applied, Raman-active modes ID'd
  • Mutual exclusion tested if centrosymmetric
  • All significant bands assigned
  • Raman vs IR compared + integrated where avail
  • Depolarization ratios → symmetry (if polarization avail)
  • Assignments consistent w/ known / proposed structure
  • Results compared w/ ref spectra where poss

Traps

  • Fluorescence overwhelm signal: Most common prob. Switch longer λ / time-gated detection. Don't interpret broad fluorescent humps as Raman bands.
  • Confuse cosmic spikes w/ real peaks: Random pos sharp intense spikes → present in single, absent in averaged. Always check reproducibility.
  • Neglect polarizability rule: Strong IR modes (asym polar) → weak/absent Raman + vv. Don't expect same int pattern as IR.
  • Ignore degradation: High power → char, polymerize, phase-transform. Spectrum changes between measurements at same spot = degradation.
  • Assume all Raman = fundamentals: Overtones (2× fundamental) + combination bands appear. Weaker than fundamentals but cause confusion.
  • Overlook low-freq: Lattice vibrations, torsional, metal-ligand below 400 cm-1. Many setups don't access. Verify notch/edge filter allows low-freq if these modes relevant.

  • interpret-ir-spectrum — complementary vibrational → dipole-active
  • interpret-nmr-spectrum — connectivity → complete structure
  • interpret-mass-spectrum — formula + frag
  • interpret-uv-vis-spectrum — electronic transitions + chromophores
  • plan-spectroscopic-analysis — select + sequence techniques pre-acquisition

GitHub Repository

pjt222/agent-almanac
Path: i18n/caveman-ultra/skills/interpret-raman-spectrum
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