bio-copy-number-gatk-cnv
About
This GATK-based skill detects copy number variants for both somatic (tumor-normal) and germline analysis from WGS or WES data. It implements the standard GATK CNV workflow, including steps for collecting read counts, denoising, and segment modeling. Use it when following GATK best practices or integrating CNV calling with other GATK variant pipelines.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-copy-number-gatk-cnvCopy and paste this command in Claude Code to install this skill
GitHub Repository
Frequently asked questions
What is the bio-copy-number-gatk-cnv skill?
bio-copy-number-gatk-cnv is a Claude Skill by GPTomics. Skills package instructions and resources that Claude loads on demand, so Claude can perform bio-copy-number-gatk-cnv-related tasks without extra prompting.
How do I install bio-copy-number-gatk-cnv?
Use the install commands on this page: add bio-copy-number-gatk-cnv to Claude Code as a plugin, or clone its repository into your skills directory, then restart Claude so it picks up the skill.
What category does bio-copy-number-gatk-cnv belong to?
bio-copy-number-gatk-cnv is in the Other category, tagged automation and data.
Is bio-copy-number-gatk-cnv free to use?
Yes. bio-copy-number-gatk-cnv is listed on AIMCP and free to install. It runs inside Claude, so no separate service account is required to use the skill itself.
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