bio-single-cell-markers-annotation
About
This Claude Skill finds marker genes and annotates cell types in single-cell RNA-seq data using Seurat (R) and Scanpy (Python). It performs differential expression analysis between clusters, identifies cluster-specific markers, scores gene sets, and assigns cell type labels. Use it when you need to characterize and annotate cell clusters from your single-cell analysis.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-single-cell-markers-annotationCopy and paste this command in Claude Code to install this skill
GitHub Repository
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