bio-read-alignment-bowtie2-alignment
About
This skill provides Bowtie2 alignment for short DNA reads, supporting both end-to-end and local alignment modes with gapped alignment. It's designed for sequencing data like ChIP-seq and ATAC-seq where flexible alignment strategies are needed. The implementation includes index building and produces sorted BAM output through integration with samtools.
Quick Install
Claude Code
Recommendednpx skills add GPTomics/bioSkills -a claude-code/plugin add https://github.com/GPTomics/bioSkillsgit clone https://github.com/GPTomics/bioSkills.git ~/.claude/skills/bio-read-alignment-bowtie2-alignmentCopy and paste this command in Claude Code to install this skill
GitHub Repository
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